Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10459 ATGGTAGGAGTGGCATTCGATGTCGGCGCCGTTCCTTTCAACGCCGACGGATGGGGCCCAATGGATTCCGCTGCCAACAACAACAACAACAACAACAACAGCCTCCCTCTCAACGTCCCCTTCGCCCCTTTCTCTCGCTCCGACAAGGTAGGCCGAATCGCCGATTGGACTCGCAACTTCAACAACCAGACCCGATCCAAAAACCCCGCCGATTCCGCCTTCGATTTCACCCTCGACGATTCCTTCCCAGGCAACACCGATGATGATGCCACATTCCGCTTAGTCGATGGTAAACCACCACCCCGTCCCAAATTCGGCCCGAAATGGAGATACCAGCAGCAAAAGCAGCTTCCTCAGCGTCGCGATGAAGAAGTCGAAGCCAAGAAACGTGAGGCGGAGAAGGAGAGAGCTCGTAGGGATCGTCTTTACCATCAGAATCGTTCGAACCCTAATAATCCTCGCCGTGAAGCTGCGGTTTGTAAGTCATCGGTAGATATTCAGCCGGAGTGGAATATGCATGATCAGATCCCGTTTTCGACTTTCACCAAACTATCCTACAATGTTCCTGAGCCTGAGGATCTTCTCCTATGTGGTGCTCTTGAGAATTATGATCGAACCTTCGATAGAATCAACCCTAAGAATGAGCGTCGTCTCGAGAGGTTTAAGAATCGGAACTTCTTCAAGGTTACAACCACTGATGACCCTGTTATCAGGAGGCTTGCTAATGAGGATAAAGCGACAGTTTTTGCAACTGATACTATTCTGTCGACTCTCATGTGTGCTCCTAGGTCTGTTTACTCTTGGGATATTGTTGTTCAGCGTGTTGGGAATAAGTTGTTCTTTGATAAACGCGATGGGTCGCAGTTGGATTTGCTTTCGGTTCATGAGACGTCACAGGAGCCTTTGCCTGAAGCTAAGGATGATATTAACTCTGCTCATTCTTTGAGTGTTGAAGCTGCTTATATCAATCAGAATTTCTCTCAGCAGGTGTTGATTAGGGATGGGAACAAGGTTACTTTTGATGAGCCTAACCCTTTTGCTAATGAGGGTGAAGAGGTTGCTTCGGTTGCTTATAGGTATAGAAGGTGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTGCATAGTGTTGTTGAATTGAATAAGCAGAGGTCATTCCTTACCGTGAATGCTTTGAATGAATTTGATCCGAAGTATTCAGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGAGGTGCTGTTTTGGCTACTGAGCTCAAGAACAATGCTAACAAGTTGGCAAAGTGGACTGCACAAGCTCTTTTGGGTAGTGCCGATATGATGAAGTTGGGTTATGTGTCTCGGATTCATCCCCGGGACCATTTTAATCATGTTATCTTGGGTGTGGTTGGATATAAACCCAAGGACTTTGCTGCACAAATTAATTTGAACACTACCAACATGTGGGGTATTGTGAAGTCTATTGTGGACTTGTGTATGAAGTTGAATGAGGGAAAATATGTCATTGTGAAGGATCCATCTAAGCCTCAGATTAGGATTTATGAGGTTCCGGTTGATGCATTTGAGAATGACTATGTGGAGGAGCCACTTCCGGAAGATGAACAAGTTCAGCCTACGGCAGAGGGTGCTGATGGTGGAGAGGAAGAAGCTGTTGCTGCTGCTGCTACAAACGATGTGGAAGATAAGCCTATTGATGCTCAAGCTTAA 1719 0.4636 MVGVAFDVGAVPFNADGWGPMDSAANNNNNNNNSLPLNVPFAPFSRSDKVGRIADWTRNFNNQTRSKNPADSAFDFTLDDSFPGNTDDDATFRLVDGKPPPRPKFGPKWRYQQQKQLPQRRDEEVEAKKREAEKERARRDRLYHQNRSNPNNPRREAAVCKSSVDIQPEWNMHDQIPFSTFTKLSYNVPEPEDLLLCGALENYDRTFDRINPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVVELNKQRSFLTVNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVIVKDPSKPQIRIYEVPVDAFENDYVEEPLPEDEQVQPTAEGADGGEEEAVAAAATNDVEDKPIDAQA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10459 572 PIRSF Transl_init_eIF3d 1 549 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vifa1g10459 572 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 543 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vifa1g10459 572 MobiDBLite consensus disorder prediction 115 145 - -
Vifa1g10459 572 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 531 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vifa1g10459 572 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 8 519 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vifa1g10459 572 Coils Coil 120 145 - -
Vifa1g10459 572 MobiDBLite consensus disorder prediction 532 572 - -
Vifa1g10459 572 MobiDBLite consensus disorder prediction 87 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10459 Vifa-Chr1 1751286939 1751288657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10459 1 572 Eukaryotic Initiation Factors Gene Family AT4G20980 76.094 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10459 K03251 - gmx:100799613 994.571