Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10455 ATGGACTCGAACAATGACGATTCGTTAGATACTCATGCAATGTTTCGATACTTTTTGCATGATTATCTTATGAAGAAGGGAATGTATAGCACTGCTGCGGTTTTCATGAACGAAACCACCGTTCCCGAAAATCCTGCATATCCCAAGTGCTTGGACTTAGAGGTAGATTCTCCAGAAGGATTTCTGCATGAATGGTGGTCTATTTTCTATGAGACATATTTGTCTAGAGTAATCAGGCTTCAAGGGTCTGATCCACAGTCATCTAATAAGGTCCCTAGAATGAGCAATACTCCAATGGATGATAGTTCCTCTTTTAGAATTCCCCAAATACCAATGAATGAGCAGAGATCTCAACAGTTTCAAGCTAGCTCTAGCTTTAACAACATCATGGCACAACAAGCTTCTCACTCGATTCCTTCAAGACTGCAAAATAATGAGCACCTTGGCAATTTTGCAGAAAATATTGATCCAAGAGTGCTTGCTCTTATGAGTGAAAATAACATGGAGTTCTTTTCAGGGATTAGTTCAAATTACCTATCGCAAGATGTAGGCAAGCAGCTCCAGAAGCAAGTCTATAAGGATAGTGGAATTCGTATGCATGTGGGGCCTCCCATACCTAGAAACCCTCTGGATGCAAGACAAAAAGCAATGCTGCCTTTAGATGGAACTCAAGTAACAAACAACTATGAAGCTCCCAATTTTGTGCCAACTAATGGAATGCCATTAAATAACCAGATGCTAACTTCACTTTCCCAAATACCAAACTATGAACAGCAGCCTCAAGTATTCAACAGACTAAATCAGGACGCAATCATCAGTCAAGAATTTACAACTACTTCTAGTAGGCAGACTTTCACAGCTCCTACAATCTCTACCAGATGTAACGGTCAAGTAACAAACAACTATGAAGCTCCTAAATTTGTGCCAACAAATGAATTGCGATTAAATAACCAGATGCTAACTTCACCTCCGCAAATACCAAACTATGGACAGCAGCCTCATGTGTTGAACAGACAAAATCAGGACGCAGTCCTTAGTAAAGAACATACAAGTACTTCTAATAGTCAGACTTTCACAGCTCCTAGAATCTCTATCAGATGTAACGGTCAATATCCAGAGATTCCCAAGAATGAATCAAGCAGTAAGGATAGAGAGATACTGGACCAAATTATAGTTGGAGAACCTCAATGTAAGCCGGATCTTCAAATGCAGAAGCAGTCCCAAAATCTTAATAACCGCGCAAAGAGAAAGATAACAGACCTCAAGGGACCTGAAGAACCTGTGCTGGACTGTGTAGATGCAGCAGATGAAAAACCAGAAGAAGAAAATGTGGATTCTTACCTGTCTATTGAAGATGGAAATTCTGATAATCGAAATATGCCTTTTAAAAATCTGAAACGAATTTCAGGAACAAACAGTAGAAATGAAAATAAAGATTTTTCACTCCAAGAAATTGGATGCCTTCACTCGAGCAAAAGCAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAAATTCTGGCAAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAAGGTGGACACTTTTAATAATTATGCCACTGAAGAAACACATTTACTTCTCATCACAGATGTTCGGTTTAGACCAGGTTCAACTATATTTGCAACATCTTCTTTTGATAAGTCTGTTAGAGTATGGGATGCAGACAGACCAAAAAAATCACTGTTCAGCCTTTCTGGACATTCTGAACAAGTAATGTCACTGGACTTCCACCCAACTAAGGTGGACCTTCTTTGCTCCTGTGATAGCAATGATATAATTCGTATGTGGAATGTGAACCAGCGTTCTAGCTTACATATAACTAAGGGAGGTAGTAAACAAGTTAGATTTCAGCCTGTTCATGGGAAGTTTATAGCTACTGCTACTGGAAACATTCCCAAACTAATTGATGTTCAGACTGCTAAAGTTGTGTGCAATCTAAAGGCACATGATAAAGATGTTGCTTCCATTTGTTGGGATAGAAGTGGGAAGTTTCTTGCTACTGTCAGTGAAGATAGTGCACGAGTCTGGTCAGATGGAAAATGCATCAGTGAGTTGCTTTCAAACGGGAACAAGTTTCAATCGTGCATGTTTCATCCAGCATATTCTAACCTCTTAGTTATTGGTGGCTATCAGAATCTTGAATTCTGGAGTCCAACTGAGAGCAGTAGAACAATGTCAGTTATGGCACACAAAGGCTTGATTGTTGGACTTGCAGATTCACCCGAAGATGAATTGATTGCCTCGGCTAGCCATGATTGCTTGGTGAAAATATGGAGATAA 2307 0.3966 MDSNNDDSLDTHAMFRYFLHDYLMKKGMYSTAAVFMNETTVPENPAYPKCLDLEVDSPEGFLHEWWSIFYETYLSRVIRLQGSDPQSSNKVPRMSNTPMDDSSSFRIPQIPMNEQRSQQFQASSSFNNIMAQQASHSIPSRLQNNEHLGNFAENIDPRVLALMSENNMEFFSGISSNYLSQDVGKQLQKQVYKDSGIRMHVGPPIPRNPLDARQKAMLPLDGTQVTNNYEAPNFVPTNGMPLNNQMLTSLSQIPNYEQQPQVFNRLNQDAIISQEFTTTSSRQTFTAPTISTRCNGQVTNNYEAPKFVPTNELRLNNQMLTSPPQIPNYGQQPHVLNRQNQDAVLSKEHTSTSNSQTFTAPRISIRCNGQYPEIPKNESSSKDREILDQIIVGEPQCKPDLQMQKQSQNLNNRAKRKITDLKGPEEPVLDCVDAADEKPEEENVDSYLSIEDGNSDNRNMPFKNLKRISGTNSRNENKDFSLQEIGCLHSSKSKVLASHFSSNGKILASAGHDKKVFIWKVDTFNNYATEETHLLLITDVRFRPGSTIFATSSFDKSVRVWDADRPKKSLFSLSGHSEQVMSLDFHPTKVDLLCSCDSNDIIRMWNVNQRSSLHITKGGSKQVRFQPVHGKFIATATGNIPKLIDVQTAKVVCNLKAHDKDVASICWDRSGKFLATVSEDSARVWSDGKCISELLSNGNKFQSCMFHPAYSNLLVIGGYQNLEFWSPTESSRTMSVMAHKGLIVGLADSPEDELIASASHDCLVKIWR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10455 768 ProSitePatterns Trp-Asp (WD) repeats signature. 593 607 IPR019775 -
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 573 615 IPR001680 GO:0005515
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 523 - -
Vifa1g10455 768 SMART WD40_4 566 606 IPR001680 GO:0005515
Vifa1g10455 768 SMART WD40_4 523 562 IPR001680 GO:0005515
Vifa1g10455 768 SMART WD40_4 648 686 IPR001680 GO:0005515
Vifa1g10455 768 SMART WD40_4 687 726 IPR001680 GO:0005515
Vifa1g10455 768 SMART WD40_4 729 768 IPR001680 GO:0005515
Vifa1g10455 768 SMART WD40_4 481 520 IPR001680 GO:0005515
Vifa1g10455 768 CDD WD40 484 768 - -
Vifa1g10455 768 ProSiteProfiles LIS1 homology (LisH) motif profile. 20 43 IPR006594 GO:0005515
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 562 IPR001680 GO:0005515
Vifa1g10455 768 Pfam WD domain, G-beta repeat 537 562 IPR001680 GO:0005515
Vifa1g10455 768 Pfam WD domain, G-beta repeat 569 606 IPR001680 GO:0005515
Vifa1g10455 768 Pfam WD domain, G-beta repeat 489 520 IPR001680 GO:0005515
Vifa1g10455 768 Pfam WD domain, G-beta repeat 652 686 IPR001680 GO:0005515
Vifa1g10455 768 Pfam WD domain, G-beta repeat 738 767 IPR001680 GO:0005515
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 573 608 - -
Vifa1g10455 768 Gene3D - 467 617 IPR015943 GO:0005515
Vifa1g10455 768 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 768 IPR044716 GO:0003714
Vifa1g10455 768 MobiDBLite consensus disorder prediction 449 470 - -
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 736 768 - -
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 562 - -
Vifa1g10455 768 MobiDBLite consensus disorder prediction 83 102 - -
Vifa1g10455 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 736 768 IPR001680 GO:0005515
Vifa1g10455 768 SUPERFAMILY WD40 repeat-like 481 767 IPR036322 GO:0005515
Vifa1g10455 768 Gene3D - 618 768 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10455 Vifa-Chr1 1749825595 1749831999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10455 475 767 Miscellaneous Gene Families AT5G08390 22.876 5.59e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa1g10455 WD40 0.011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10455 - - psat:127082017 1112.83