Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10454 ATGGACTCGAACAATGACGATTCGTTAGATACTCATGCAATGTTTCGATACTTTTTGCATGATTATCTTATGAAGAAGGGAATGTATAGCACTGCTGCGGTTTTCATGAACGAAACCACCGTTCCCGAAAATCCTGCATATCCCAAGTGCTTGGACTTAGAGGTAGATTCTCCAGAAGGATTTCTGCATGAATGGTGGTCTATTTTCTATGAGACATATTTGTCTAGAGTAATCAGGCTTCAAGGGTCTGATCCACAGTCATCTAATAAGGTCCCTAGAATGAGCAATACTCCAATGGATGATAGTTCCTCTTTTAGAATTCCCCAAATACCAATGAATGAGCAGAGATCTCAACAGTTTCAAGCTAGCTCTAGCTTTAACAACATCATGGCACAACAAGCTTCTCACTCGATTCCTTCAAGACTGCAAAATAATGAGCACCTTGGCAATTTTGCAGAAAATATTGATCCAAGAGTGCTTGCTCTTATGAGTGAAAATAACATGGAGTTCTTTTCAGGGATTAGTTCAAATTACCTATCGCAAGATGTAGGCAAGCAGCTCCAGAAGCAAGTCTATAAGGATAGTGGAATTCGTATGCATGTGGGGCCTCCCATACCTAGAAACCCTCTGGATGCAAGACAAAAAGCAATGCTGCCTTTAGATGGAACTCAAGTAACAAACAACTATGAAGCTCCCAATTTTGTGCCAACTAATGGAATGCCATTAAATCAGCCTCAAGTATTCAACAGACTAAATCAGGACGCAATCATCAGTCAAGAATTTACAACTACTTCTAGTAGGCAGACTTTCACAGCTCCTACAATCTCTACCAGATGTAACGGTCAAGTAACAAACAACTATGAAGCTCCTAAATTTGTGCCAACAAATGAATTGCGATTAAATAACCAGATGCTAACTTCACCTCCGCAAATACCAAACTATGGACAGCAGCCTCATGTGTTGAACAGACAAAATCAGGACGCAGTCCTTAGTAAAGAACATACAAGTACTTCTAATAGTCAGACTTTCACAGCTCCTAGAATCTCTATCAGATGTAACGGTCAATATCCAGAGATTCCCAAGAATGAATCAAGCAGTAAGGATAGAGAGATACTGGACCAAATTATAGTTGGAGAACCTCAATGTAAGCCGGATCTTCAAATGCAGAAGCAGTCCCAAAATCTTAATAACCGCGCAAAGAGAAAGATAACAGACCTCAAGGGACCTGAAGAACCTGTGCTGGACTGTGTAGATGCAGCAGATGAAAAACCAGAAGAAGAAAATGTGGATTCTTACCTGTCTATTGAAGATGGAAATTCTGATAATCGAAATATGCCTTTTAAAAATCTGAAACGAATTTCAGGAACAAACAGTAGAAATGAAAATAAAGATTTTTCACTCCAAGAAATTGGATGCCTTCACTCGAGCAAAAGCAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAAATTCTGGCAAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAAGGTGGACACTTTTAATAATTATGCCACTGAAGAAACACATTTACTTCTCATCACAGATGTTCGGTTTAGACCAGGTTCAACTATATTTGCAACATCTTCTTTTGATAAGTCTGTTAGAGTATGGGATGCAGACAGACCAAAAAAATCACTGTTCAGCCTTTCTGGACATTCTGAACAAGTAATGTCACTGGACTTCCACCCAACTAAGGTGGACCTTCTTTGCTCCTGTGATAGCAATGATATAATTCGTATGTGGAATGTGAACCAGCGTTCTAGCTTACATATAACTAAGGGAGGTAGTAAACAAGTTAGATTTCAGCCTGTTCATGGGAAGTTTATAGCTACTGCTACTGGAAACATTCCCAAACTAATTGATGTTCAGACTGCTAAAGTTGTGTGCAATCTAAAGGCACATGATAAAGATGTTGCTTCCATTTGTTGGGATAGAAGTGGGAAGTTTCTTGCTACTGTCAGTGAAGATAGTGCACGAGTCTGGTCAGATGGAAAATGCATCAGTGAGTTGCTTTCAAACGGGAACAAGTTTCAATCGTGCATGTTTCATCCAGCATATTCTAACCTCTTAGTTATTGGTGGCTATCAGAATCTTGAATTCTGGAGTCCAACTGAGAGCAGTAGAACAATGTCAGTTATGGCACACAAAGGCTTGATTGTTGGACTTGCAGATTCACCCGAAGATGAATTGATTGCCTCGGCTAGCCATGATTGCTTGGTGAAAATATGGAGATAA 2262 0.397 MDSNNDDSLDTHAMFRYFLHDYLMKKGMYSTAAVFMNETTVPENPAYPKCLDLEVDSPEGFLHEWWSIFYETYLSRVIRLQGSDPQSSNKVPRMSNTPMDDSSSFRIPQIPMNEQRSQQFQASSSFNNIMAQQASHSIPSRLQNNEHLGNFAENIDPRVLALMSENNMEFFSGISSNYLSQDVGKQLQKQVYKDSGIRMHVGPPIPRNPLDARQKAMLPLDGTQVTNNYEAPNFVPTNGMPLNQPQVFNRLNQDAIISQEFTTTSSRQTFTAPTISTRCNGQVTNNYEAPKFVPTNELRLNNQMLTSPPQIPNYGQQPHVLNRQNQDAVLSKEHTSTSNSQTFTAPRISIRCNGQYPEIPKNESSSKDREILDQIIVGEPQCKPDLQMQKQSQNLNNRAKRKITDLKGPEEPVLDCVDAADEKPEEENVDSYLSIEDGNSDNRNMPFKNLKRISGTNSRNENKDFSLQEIGCLHSSKSKVLASHFSSNGKILASAGHDKKVFIWKVDTFNNYATEETHLLLITDVRFRPGSTIFATSSFDKSVRVWDADRPKKSLFSLSGHSEQVMSLDFHPTKVDLLCSCDSNDIIRMWNVNQRSSLHITKGGSKQVRFQPVHGKFIATATGNIPKLIDVQTAKVVCNLKAHDKDVASICWDRSGKFLATVSEDSARVWSDGKCISELLSNGNKFQSCMFHPAYSNLLVIGGYQNLEFWSPTESSRTMSVMAHKGLIVGLADSPEDELIASASHDCLVKIWR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10454 753 Gene3D - 603 753 IPR015943 GO:0005515
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 593 - -
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 721 753 IPR001680 GO:0005515
Vifa1g10454 753 ProSiteProfiles LIS1 homology (LisH) motif profile. 20 43 IPR006594 GO:0005515
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 600 IPR001680 GO:0005515
Vifa1g10454 753 Pfam WD domain, G-beta repeat 723 752 IPR001680 GO:0005515
Vifa1g10454 753 Pfam WD domain, G-beta repeat 474 505 IPR001680 GO:0005515
Vifa1g10454 753 Pfam WD domain, G-beta repeat 522 547 IPR001680 GO:0005515
Vifa1g10454 753 Pfam WD domain, G-beta repeat 637 671 IPR001680 GO:0005515
Vifa1g10454 753 Pfam WD domain, G-beta repeat 554 591 IPR001680 GO:0005515
Vifa1g10454 753 ProSitePatterns Trp-Asp (WD) repeats signature. 578 592 IPR019775 -
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 473 508 - -
Vifa1g10454 753 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 753 IPR044716 GO:0003714
Vifa1g10454 753 CDD WD40 469 753 - -
Vifa1g10454 753 Gene3D - 452 602 IPR015943 GO:0005515
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 721 753 - -
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 547 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 714 753 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 551 591 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 508 547 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 672 711 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 466 505 IPR001680 GO:0005515
Vifa1g10454 753 SMART WD40_4 633 671 IPR001680 GO:0005515
Vifa1g10454 753 SUPERFAMILY WD40 repeat-like 466 752 IPR036322 GO:0005515
Vifa1g10454 753 MobiDBLite consensus disorder prediction 83 102 - -
Vifa1g10454 753 MobiDBLite consensus disorder prediction 434 455 - -
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 514 IPR001680 GO:0005515
Vifa1g10454 753 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10454 Vifa-Chr1 1749825595 1749831999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10454 460 752 Miscellaneous Gene Families AT5G08390 22.876 6.57e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa1g10454 WD40 0.011 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10454 - - psat:127082017 1076.23