Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10452 ATGAAGTTCAACGTTGCGAATCCCACCACTGGATGCCAGAAGAAGCTTGAAATTGATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCTCAGGAGGTTAATGGTGATGCTTTGGGAGAGGAATTCAAAGGCTATGTTTTCAAAATTACTGGAGGGTGTGACAAACAAGGTTTTCCAATGAAGCAAGGAGTGTTAACTCCGGGTCGCGTTCGCCTCTTGCTTCACCGAGGAACTCCTTGTTTCCGAGGACACGGAAGGAGAAATGGGGAGCGAAGGAGAAAGTCTGTCCGTGGGTGCATTGTCAGCCCAGATCTATCTGTTTTGAACTTGGTGATTGTGAAGAAGGGTGAAAATGATTTGCCAGGCTTGACAGATGTTGAGAAGCCTAGAATGAGGGGTCCCAAGAGAGCTTCCAAGATCCGCAAGCTCTTCAATCTTTCTAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGAACTTTCACAACCAAAGCTGGGAAAAAGCAGAGCAAAGCACCAAAGATTCAGCGCCTGGTCACTCCCCTGACACTTCAAAGGAAGAGGGCTAGAATTGCAGATAAGAAGAAAAGGATTGCTAAAGCAAAATCTGAGGCAGCTGAGTACCAAAAACTTCTCGCCTCCAGATTGAAGGAGCAGAGGGACCGCCGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCTACCGCCAAGCCTGTTGCAGCATAG 744 0.4745 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKQSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLSTAKPVAA 247
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10452 247 Coils Coil 189 216 - -
Vifa1g10452 247 Gene3D - 133 234 - -
Vifa1g10452 247 MobiDBLite consensus disorder prediction 219 237 - -
Vifa1g10452 247 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vifa1g10452 247 MobiDBLite consensus disorder prediction 219 247 - -
Vifa1g10452 247 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vifa1g10452 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vifa1g10452 247 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vifa1g10452 247 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g10452 Vifa-Chr1 1749610477 1749612443 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10452 1 247 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 74.297 9.86e-123 345
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10452 K02991 - sind:105176438 432.18