Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10445 ATGGATGAAAGTTGGGGTGAGGGAAAGAGAAGCTATGAGTATGAAGTAGAAGAGGAAGAAGATGTGAGTTATGGAGATGATGGAAGGAAGAAAAGGGTAGTGAGTGAACATGTTAGGAAAGTGTCAAAAGCTGGTGGATCAGTGACACCTTCTTGTCAAGTTGATAACTGTAATGCTGATCTAACTGGTGGTAAGCAGTATCATAAGCGTCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCTGTGCTCATTTCAGAGATGCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGTTATCAGAATTTGATGACTTGAAAAGAAGTTGTAGAAGGCGTTTGGCTGGACACAATGAGAGGCGTCGCAAAAATGCGTCGGAGTTTAATGGAGAAGGAATTCATTGA 411 0.4112 MDESWGEGKRSYEYEVEEEEDVSYGDDGRKKRVVSEHVRKVSKAGGSVTPSCQVDNCNADLTGGKQYHKRHKVCENHSKAHSVLISEMQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKNASEFNGEGIH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10445 136 SUPERFAMILY SBT domain 50 129 IPR036893 GO:0003677|GO:0005634
Vifa1g10445 136 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g10445 136 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Vifa1g10445 136 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Vifa1g10445 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 127 IPR044817 GO:0003677
Vifa1g10445 136 FunFam Squamosa promoter-binding-like protein 14 41 113 - -
Vifa1g10445 136 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g10445 136 Pfam SBP domain 52 125 IPR004333 GO:0003677
Vifa1g10445 136 PIRSF SBP 2 136 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10445 Vifa-Chr1 1747308605 1747310355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10445 43 129 SBP-box Gene Family AT2G33810 65.556 2.92e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g10445 SBP 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10445 - - gmx:100782285 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10445 1 1747308605 1747310355 Vifa1g10445 1 1747308605 1747310355 ECH