Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10439 ATGCCTGTTTCTGATTCTCCCCCCGTACCAGATGATCATTCTCGTTATGATGAAGGCCCAGAGGAGGAGGAAGTAGAAGAGGTTGAGGAAGTAGAAGAGGAAGAAGATCAAGATCAGGAAGAGGAAGAAGAAGAGGAAGAAGTTGAAGAAGAAGTTGAAGAGGAGGTGGAAGAAGTTGAAGAGCAGGAGGAGGAGGAGGAGGAAGAGGTTGAAGAAGTTGAGGAGGAAGAGGAAACAGTAGAGGTGGAAGAGGAGGAAGAAGAGGAAGAAGAGATGGAAGAAGTTGAAGTTGAAGAGGAGGAGGAAGAGGAAGAACAAGAAACAGTAGTGGAGGAGAAAAAGGAAGACAAAGATGAGATTCCAGTTTCTCTGCCCAATGCGAATGAGCTTAGCAAAGAAACTGTAGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAAGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAAAGAAGAAGCAATAGAGATAGAAGATGAGAAAGAACAAGAAACAGTCATAGAGGAGAGAGATAAAGACAAAAGTGGGGTTCCAGATTCTCTTCCCGATGCGGATAAACATACAAAAGATTCAAGCCGACATATGGAGCTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTACCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGCGGTCAGTTTCTTCTGTGCCCGAGAATCCTGAAGTAATACGGTCATCACATGGTGTGGAAGAGAACAATACCATGCTTTTAGCACCGACTCCGCTGCATGAGGAATTGACATTGAAACAAGAAGCTTCTAGTCCTCCAAAACCAAGTGAAAACTTAATTCCTGCTGAAGATGAGAAAAATCAAGGCTTAAATGTTGATGTTGAAAATTCGGGATATCTTCTTCAGAAGAAAACCTTTGAAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTGTCTGATGTTAAGGACAATGATTCTATGGCCGCCAAGTTATCTAGTAATACGGTAAAAGACTTGGTTACTGGAATCATACCGAGAAATGATTTTGTTGAGGATGCTGATGGTGGTCAGAACTCTAAGGAGAAAATTTTGCAGTCAGAGACAGAGTCAAAGGTTGATGCGAAACAAAAGCCATCAAGGGCTAGAAGTCCATCTCCCAGTGCTAAGATTACAGATGGAAACAAAAGACGAGCAGTTGCATGCGCTTTTTTTGCTAAAGGTTGGTGCATTAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGCGGAAAATACTGACCAGGGAGCTGAAGGAAACCGAGTTAACACACATCAGAAGAGAGAATTGAAATCGGAAAAAGTTGTTAAGGAAAAAGTTGACGGGTCGAGAACGAATGAGAGAGAAGCGAGTCCAAGTTGGCATCCATCTCATGAAAAAGAGAAGTTTCCGATGAGGGACAACTTGTTTCCAGAGAATAGATCTTCAGTTAACACATCAAACAATTATTTCAGCTCAAATCTTTCCTCGTATTCATCCCATGCAGAGGGAATGACTGCTATTCGAAATCAACACGTCTACAGAGGTTATACACCCAACAAAGATTTTAGTTCGTCTTTAGGTGCAAGTGCTTTGGACTCTAAAAAGCTTTTGAATAGTGAGAAAGAATATCACGCCTATAAGTCTACTTTCTCTTCAGACCGGGAAGATTTGTATCTAGGTGGTTCATCTAGGGTTTCACCACATGCTAATGGATATAAGCTAAAAACTCGTTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCTATGAATGTATCATCCCCTGGAGATCTTTATGACCCTCTTCGCGATAGCATTGAAATACCTAATATTGGAGATGGGTCTTTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGGCGCGGACACACGATGGTTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTATGAAAATGAGCCAAACAGAAGTGCTGTTCCTCGTGGAAAAGATTCTCTTGCAACCAAAACAGAAATAACATCAGGAACTTGTGGAAACTACCAAAATGGTAGCATAGATGTGGGACAAAATGCCTTTGGTGTTGAAGATAGAATTGAAACAACGAAAAAACGAACCAAGCATGATGCTAGGCATCACGGTGATGGATCACAGCACAAAAATAAAAGAGTAGCAAGGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGACGGAGGGTAGTAATCACAAAGAAACAAAGGCGCTGAAAATTTTTCGTGCATCCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGAAGCACATATAACAATAGTTAAAAAATCAGTAGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACAAATGAAGATTCTGCTAAGCTATATATTTCTTCATGTCGGCTGAAAATTACAAAGTTAGTCCATGGATATGTCAATAAACATGGAAAATCTTGA 2865 0.4157 MPVSDSPPVPDDHSRYDEGPEEEEVEEVEEVEEEEDQDQEEEEEEEEVEEEVEEEVEEVEEQEEEEEEEVEEVEEEEETVEVEEEEEEEEEMEEVEVEEEEEEEEQETVVEEKKEDKDEIPVSLPNANELSKETVEVVEEEEEEEEEEEEEEEEEEEEEEGREEEEEEEEEEEEEEEEEEEEEEKEEAIEIEDEKEQETVIEERDKDKSGVPDSLPDADKHTKDSSRHMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLRSVSSVPENPEVIRSSHGVEENNTMLLAPTPLHEELTLKQEASSPPKPSENLIPAEDEKNQGLNVDVENSGYLLQKKTFEGCSEPDCNSKASLSDVKDNDSMAAKLSSNTVKDLVTGIIPRNDFVEDADGGQNSKEKILQSETESKVDAKQKPSRARSPSPSAKITDGNKRRAVACAFFAKGWCIRGSSCSFLHIKDSAENTDQGAEGNRVNTHQKRELKSEKVVKEKVDGSRTNEREASPSWHPSHEKEKFPMRDNLFPENRSSVNTSNNYFSSNLSSYSSHAEGMTAIRNQHVYRGYTPNKDFSSSLGASALDSKKLLNSEKEYHAYKSTFSSDREDLYLGGSSRVSPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQARTHDGSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSAVPRGKDSLATKTEITSGTCGNYQNGSIDVGQNAFGVEDRIETTKKRTKHDARHHGDGSQHKNKRVARDDKIHEMEVDFQTEGSNHKETKALKIFRASLVDLVKELLKPFWHEGRLSKEAHITIVKKSVDKVVSTLEPHQIPTNEDSAKLYISSCRLKITKLVHGYVNKHGKS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10439 954 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 497 516 IPR000571 GO:0046872
Vifa1g10439 954 SUPERFAMILY CCCH zinc finger 492 516 IPR036855 GO:0046872
Vifa1g10439 954 ProSiteProfiles Zinc finger C3H1-type profile. 492 519 IPR000571 GO:0046872
Vifa1g10439 954 MobiDBLite consensus disorder prediction 826 848 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 307 323 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 17 109 - -
Vifa1g10439 954 Coils Coil 127 198 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 450 475 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 445 489 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 834 848 - -
Vifa1g10439 954 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 145 952 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 324 345 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 360 386 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 292 345 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 739 787 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 532 579 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 523 585 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 199 235 - -
Vifa1g10439 954 Coils Coil 21 119 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 1 249 - -
Vifa1g10439 954 MobiDBLite consensus disorder prediction 135 198 - -
Vifa1g10439 954 SMART c3hfinal6 492 518 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10439 Vifa-Chr1 1746273673 1746278667 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g10439 zf-CCCH 3.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10439 - - cam:101503101 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10439 1 1746273673 1746278667 Vifa1g10439 1 1746273673 1746278667 ECH