Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10438 ATGCCTGTTTCTGATTCTCCCCCCGTACCAGATGATCATTCTCGTTATGATGAAGGCCCAGAGGAGGAGGAAGTAGAAGAGGTTGAGGAAGTAGAAGAGGAAGAAGATCAAGATCAGGAAGAGGAAGAAGAAGAGGAAGAAGTTGAAGAAGAAGTTGAAGAGGAGGTGGAAGAAGTTGAAGAGCAGGAGGAGGAGGAGGAGGAAGAGGTTGAAGAAGTTGAGGAGGAAGAGGAAACAGTAGAGGTGGAAGAGGAGGAAGAAGAGGAAGAAGAGATGGAAGAAGTTGAAGTTGAAGAGGAGGAGGAAGAGGAAGAACAAGAAACAGTAGTGGAGGAGAAAAAGGAAGACAAAGATGAGATTCCAGTTTCTCTGCCCAATGCGAATGAGCTTAGCAAAGAAACTGTAGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAAGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAAAGAAGAAGCAATAGAGATAGAAGATGAGAAAGAACAAGAAACAGTCATAGAGGAGAGAGATAAAGACAAAAGTGGGGTTCCAGATTCTCTTCCCGATGCGGATAAACATACAAAAGATTCAAGCCGACATATGGAGCTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTACCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGGGGCCAGTTTCTTCTGTGCCAGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTGAAAGAGGAGAATTTGCGGTCAGTTTCTTCTGTGCCCGAGAATCCTGAAGTAATACGGTCATCACATGGTGTGGAAGAGAACAATACCATGCTTTTAGCACCGACTCCGCTGCATGAGGAATTGACATTGAAACAAGAAGCTTCTAGTCCTCCAAAACCAAGTGAAAACTTAATTCCTGCTGAAGATGAGAAAAATCAAGGCTTAAATGTTGATGTTGAAAATTCGGGATATCTTCTTCAGAAGAAAACCTTTGAAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTGTCTGATGTTAAGGACAATGATTCTATGGCCGCCAAGTTATCTAGTAATACGGTAAAAGACTTGGTTACTGGAATCATACCGAGAAATGATTTTGTTGAGGATGCTGATGGTGGTCAGAACTCTAAGGAGAAAATTTTGCAGTCAGAGACAGAGTCAAAGGTTGATGCGAAACAAAAGCCATCAAGTAGGGCTAGAAGTCCATCTCCCAGTGCTAAGATTACAGATGGAAACAAAAGACGAGCAGTTGCATGCGCTTTTTTTGCTAAAGGTTGGTGCATTAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGCGGAAAATACTGACCAGGGAGCTGAAGGAAACCGAGTTAACACACATCAGAAGAGAGAATTGAAATCGGAAAAAGTTGTTAAGGAAAAAGTTGACGGGTCGAGAACGAATGAGAGAGAAGCGAGTCCAAGTTGGCATCCATCTCATGAAAAAGAGAAGTTTCCGATGAGGGACAACTTGTTTCCAGAGAATAGATCTTCAGTTAACACATCAAACAATTATTTCAGCTCAAATCTTTCCTCGTATTCATCCCATGCAGAGGGAATGACTGCTATTCGAAATCAACACGTCTACAGAGGTTATACACCCAACAAAGATTTTAGTTCGTCTTTAGGTGCAAGTGCTTTGGACTCTAAAAAGCTTTTGAATAGTGAGAAAGAATATCACGCCTATAAGTCTACTTTCTCTTCAGACCGGGAAGATTTGTATCTAGGTGGTTCATCTAGGGTTTCACCACATGCTAATGGATATAAGCTAAAAACTCGTTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCTATGAATGTATCATCCCCTGGAGATCTTTATGACCCTCTTCGCGATAGCATTGAAATACCTAATATTGGAGATGGGTCTTTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGGCGCGGACACACGATGGTTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTATGAAAATGAGCCAAACAGAAGTGCTGTTCCTCGTGGAAAAGATTCTCTTGCAACCAAAACAGAAATAACATCAGGAACTTGTGGAAACTACCAAAATGGTAGCATAGATGTGGGACAAAATGCCTTTGGTGTTGAAGATAGAATTGAAACAACGAAAAAACGAACCAAGCATGATGCTAGGCATCACGGTGATGGATCACAGCACAAAAATAAAAGAGTAGCAAGGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGACGGAGGGTAGTAATCACAAAGAAACAAAGGCGCTGAAAATTTTTCGTGCATCCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGAAGCACATATAACAATAGTTAAAAAATCAGTAGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACAAATGAAGATTCTGCTAAGCTATATATTTCTTCATGTCGGCTGAAAATTACAAAGTTAGTCCATGGATATGTCAATAAACATGGAAAATCTTGA 2868 0.4156 MPVSDSPPVPDDHSRYDEGPEEEEVEEVEEVEEEEDQDQEEEEEEEEVEEEVEEEVEEVEEQEEEEEEEVEEVEEEEETVEVEEEEEEEEEMEEVEVEEEEEEEEQETVVEEKKEDKDEIPVSLPNANELSKETVEVVEEEEEEEEEEEEEEEEEEEEEEGREEEEEEEEEEEEEEEEEEEEEEKEEAIEIEDEKEQETVIEERDKDKSGVPDSLPDADKHTKDSSRHMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLGPVSSVPENPEVIRSSHDMELDVKEENLRSVSSVPENPEVIRSSHGVEENNTMLLAPTPLHEELTLKQEASSPPKPSENLIPAEDEKNQGLNVDVENSGYLLQKKTFEGCSEPDCNSKASLSDVKDNDSMAAKLSSNTVKDLVTGIIPRNDFVEDADGGQNSKEKILQSETESKVDAKQKPSSRARSPSPSAKITDGNKRRAVACAFFAKGWCIRGSSCSFLHIKDSAENTDQGAEGNRVNTHQKRELKSEKVVKEKVDGSRTNEREASPSWHPSHEKEKFPMRDNLFPENRSSVNTSNNYFSSNLSSYSSHAEGMTAIRNQHVYRGYTPNKDFSSSLGASALDSKKLLNSEKEYHAYKSTFSSDREDLYLGGSSRVSPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQARTHDGSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSAVPRGKDSLATKTEITSGTCGNYQNGSIDVGQNAFGVEDRIETTKKRTKHDARHHGDGSQHKNKRVARDDKIHEMEVDFQTEGSNHKETKALKIFRASLVDLVKELLKPFWHEGRLSKEAHITIVKKSVDKVVSTLEPHQIPTNEDSAKLYISSCRLKITKLVHGYVNKHGKS 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10438 955 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 145 953 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 307 323 - -
Vifa1g10438 955 ProSiteProfiles Zinc finger C3H1-type profile. 493 520 IPR000571 GO:0046872
Vifa1g10438 955 SMART c3hfinal6 493 519 IPR000571 GO:0046872
Vifa1g10438 955 MobiDBLite consensus disorder prediction 17 109 - -
Vifa1g10438 955 Coils Coil 127 198 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 400 419 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 450 475 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 533 580 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 827 849 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 360 386 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 324 345 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 524 586 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 292 345 - -
Vifa1g10438 955 SUPERFAMILY CCCH zinc finger 493 517 IPR036855 GO:0046872
Vifa1g10438 955 MobiDBLite consensus disorder prediction 835 849 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 199 235 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 445 490 - -
Vifa1g10438 955 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 498 517 IPR000571 GO:0046872
Vifa1g10438 955 Coils Coil 21 119 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 1 249 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 740 788 - -
Vifa1g10438 955 MobiDBLite consensus disorder prediction 135 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10438 Vifa-Chr1 1746273673 1746278667 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g10438 zf-CCCH 3.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10438 - - cam:101503101 927.546