Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10435 ATGGCTTCTTCATCTTCTTCTTCGGCAAACCGTGAAGGACACTACAGAGGTGTTCGAAAGCGACCATGGGGACGCTACGCTGCTGAGATTCGTGATCCGTGGAAGAAAACCCGTGTTTGGTTGGGTACATTTGATACTCCCGAGGAAGCTGCACTTGCTTACGACGGTGCCGCTCGTTCTCTCCGTGGAGCTAAAGCTAAAACAAACTTTCCTCCGGCTCCGGTCACCGGCGGTCTTTGCCTCGACCTCAACGCTCCTTCTACTGGCCTAACCACTTGGTCACCAGTTCCTTCGCGGAGCTTTGTTCTCACTGAGTTTCTCCAAACCGGTGTTCTCAAGGATTTCAACCCACCTCCGCCTCCACCCATCGCTTCCGTCGCTGGACAGAGGCGCAATGACGGTGCTCTTCCGGTTTCTTCCAGAGTTCAGATGGTAGAGAACTCCCCAACGGCAGCTTACTTAGGACTTGTTCGTCGTGGGATCCCGATTGACCTGAACGAACCTCCACCGTTGTGGCTATGA 522 0.5402 MASSSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVTGGLCLDLNAPSTGLTTWSPVPSRSFVLTEFLQTGVLKDFNPPPPPPIASVAGQRRNDGALPVSSRVQMVENSPTAAYLGLVRRGIPIDLNEPPPLWL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10435 173 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Vifa1g10435 173 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vifa1g10435 173 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Vifa1g10435 173 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Vifa1g10435 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10435 Vifa-Chr1 1745482483 1745483004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10435 5 173 AP2-EREBP Transcription Factor Family AT1G28360 46.305 9.63e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g10435 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10435 - - cam:101504196 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10435 1 1745482483 1745483004 Vifa1g10435 1 1745482483 1745483004 ECH