Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10433 ATGGCGCCGAAGGTTAAGAGCGGTGACATCAACGTAACCAGTAACGGCAACATTAACGGCGTCGTTAAAGAGCCGCATTTTCGTGGCGTGAGGAAGAGGCCATGGGGAAGATACGCCGCCGAGATCAGAGATCCAGGAAAGAAGAGCCGTGTTTGGCTCGGAACCTTCGACACGGCGGAGGAAGCGGCGAGAGCCTACGACACCGCCGCACGTGAATTCCGTGGTCCCAAGGCTAAAACAAACTTCCCTTATCATACGGAAACTCTCAAGATCCATAGCCCTAGCCAAAGCAGCACCGTCGAATCCTCGAGCCGCGACCGTGACGCCGCCGCCGCTGACTCTTCTCCTCCTCTTGACCTCAATTTGGCTCCTCCAATCAGAGGTCCGGTACGTTTTCCGTTTCAGCATCGCTTCACTCTGAATCCGATGCCGGCGGTAAACCAGGCGCAGGCGTTTTACTTCGACGCTAATCTACGCGCCGGTAAGGGTTACGGATTCGAATATTTTCCCTCCGTGACAGCGAGTGGAATCCACGAGACGACCACCGGTGCACACAGTGATTCCGACTCTTCGTCGGTGATTGATCTGAACCACCGTGAAGACGGTGTAAAAGACGGTAGAGATTTCGATTTCGATCTTAACTATCCTCCTCCAGAAGACATGCTATGA 669 0.5411 MAPKVKSGDINVTSNGNINGVVKEPHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPYHTETLKIHSPSQSSTVESSSRDRDAAAADSSPPLDLNLAPPIRGPVRFPFQHRFTLNPMPAVNQAQAFYFDANLRAGKGYGFEYFPSVTASGIHETTTGAHSDSDSSSVIDLNHREDGVKDGRDFDFDLNYPPPEDML 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10433 222 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Vifa1g10433 222 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vifa1g10433 222 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g10433 222 MobiDBLite consensus disorder prediction 180 222 - -
Vifa1g10433 222 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Vifa1g10433 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 194 - -
Vifa1g10433 222 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vifa1g10433 222 MobiDBLite consensus disorder prediction 86 105 - -
Vifa1g10433 222 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vifa1g10433 222 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vifa1g10433 222 FunFam Ethylene-responsive transcription factor 2 26 84 - -
Vifa1g10433 222 MobiDBLite consensus disorder prediction 86 124 - -
Vifa1g10433 222 MobiDBLite consensus disorder prediction 192 214 - -
Vifa1g10433 222 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Vifa1g10433 222 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10433 Vifa-Chr1 1744072419 1744073087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10433 1 92 AP2-EREBP Transcription Factor Family AT5G44210 67.347 7.57e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g10433 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10433 K09286 - gmx:100170742 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10433 1 1744072419 1744073087 Vifa1g10433 1 1744072419 1744073087 ECH