Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10429 ATGGAGGAAGAAGCAGAGAATAATACTCAGAAGGTTGAAGATGGAGGTGAAAATAGCAATGAGAATTTCAACAACAGTAAAATTATGAGTTCCAGTGAAGGTCAAAGCAAGCCCAAGCGTCAGATGAAAACCCCTTTTCAGCTTGAAACGCTGGAGAAAGCTTATGCTTTGGAAACTTACCCGTCGGAGGCTACTAGGGTGGAGTTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCGTCTAAGAAGCCACGGAAGGTGCCACCTTTGCTTGATTCTACTACTAATGAACTTAACCCCAAGTTGGTTATTGAACCTTGTAACGAATATGGATCCGGGTCGGGTTCTGGGTCTAGTCCGGTGACACGACCGGAGTTGCGAAATGTGGTGCCTCGGAGTTACTATGAGTCGCCACAGAGTATTATGGAGCTTAGAGCTATTGCTTGTGTGGAAGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCTATTTTGGGAATTGAGTTTGATCCATTGCCGCCGGATGCATTTGGGGCACCCTTAGTTGTTGCAGAACAGCAGAAGCGGCCTAGTCTTCCCTACGACAGTAAAATATATGAAAGACATGAAGTTAGAACGAACAAGGCAATGACAAGGACATTCCCTGAATATACATTTGTTCCGAACCAGTCCAGCATTAGGTCTGAGACGTTTGAGCAATTGAGTCAACCTCATTTATATGATCCACTGGAGGGTCCTACAAGAACTCCTTCTTTTCCGATTGGAAATGAACATCTACCTAGAATACATGCTACTCAAGGCCATTCTTCCCGTACTCGCCTTTCGTCTCAACAGGATAAGCAAGTGAATCCCTATACTTCCCCTCCTCCCCTTTTGTCTCAACCGAACAAGCAATTGATTCCCTTTCCGTCTCCTCCTCGAGATAATGATGTTGTCCCCAATAGGGAACCTCATTCAGACATAGTCATTGCTAGCATGAACTCCCAATTTACTGATCACCAAATTGTTGGACAAGAAAATCTTATAGCTTTGCCTGGTGTACAAGTTTCCCATAATGATGCAGTATTGCGGGTGGAGAAGAAACGAAAGAGTGATGATGCCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGAAGAAAGAACTTGAGAAACAAGATATCCTAAGAAAAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAGACAAGATCGTGAGAGAAAGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGGCGCGAGATAGAACGAAGGGAAAAATATTTGATGAAAGAACATTTAAGAGCTGAGAAAAGAAAGCAAAAAGAAGAGATTCGCAGAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAAAAGGCAAATGCTCGTAGAATAGCCAAAGAATCTATGGAGCTCATTGAGGATGAACAGCTTGAATTGATGGAGTTGGCTGCAGTAAGCAATGGGCTTACCTCTATTATCCATATTGATCTTGATACCTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCCAAAAGTGTAAAGCTAAAAAAACCATTTGCTATTCTGCCCTGGATCAACTCGGAACAAGATGTTGGCAACCTTTTCATGGTTTGGAGATTTTTGATTACCTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAATTCGTGCAAGCTTTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACAAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCGCTATCTGCAGGATTGGGACCACAGTTGAGAAAAAGAAGTATTACTTGGTCATATGCAAATGATAAAGATGAGGGAAGAAGCGGCGAAGATGTCATTTCAACACTTCGTAATGGTTCAGCAGCTGTAACTGCAGTGGCAAAAATGCGAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACACAGGTTAACTCCAGGAACTGTTAAATTCGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGAGCTTGCTGAAAAGATTCAGAAATCTGGTCTCCGTGACCTGACGACCAGCAAAACACCTGAAGCATCAATTTCAGTTGCTTTGACAAGAGATGGAAAACTTTTCGAAAGGATAGCTCCATCAACATATCGTGTACGAAGTGCATTTAGAAAGGATCCTGCTGAATCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGATGACGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGAGGATGATTTGGTTAATCCTTCAAGTGGAAACCCACATTCAGAACAATATGATGACATGAACATTTGCTCAGTAAATGTAAAAGCAAATTTGGGCCATGATGTAGACTTTATTCAAAATGAGCTTGATACCGATCTTCGTTGTTTTCCTGAAAATGGTTCCAAGGATGCCGATTGTTCCAGTTCTCTCACCAAACAACCAGTTGCTCGTGAAAATGTAAATACTGGAAATCTTGATGATGATATTATGGAAATCGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTCACCGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTATTGTTCTTGAGGATCGATTGGAATCAGCAAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAATTAGGCTAAAAGATGATTATGTTGGTAAATTAGATTACCCTTCACTTACTGGAAATAAATTTGAAACACAAGACACATATCCTGCTGTTGAGGGAAACCATAGTCCATTGCTCAACATCAATATTAACAACATTAAGAATGAAGCATTCCCCAGCACTACAGAAAACCAAAAAGGAGCTCCTTCTGCACAGAGCGTACTTACTGAAAAGCCATCAACAGTTCAAGATTTCTGCACAGGCACAGGTCCAGACAACTTTCAGACTCAGGTAGCTGCACCGTATTCAAAAAGGTCACGGTCACAGTTGAAGTCCTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGACCGCAGGCGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGTAATGACCCTGGTTCTGGCAGGATCTTTGTTGAACATCATGACGGCAGTTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATATTCTTTTGACATCACTGGATTCACGCGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAACTACACAATATGACAAAATTGGAAGCGTAGAGGAAGGTTCTGTTAAAACTGAAGCTGATGAAACATATCCAGTGCGTGAGTGCCATTCAGGACCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACTCTGGTACATTAGAAACTTCATCATCCTTCAAAGTTGAGCTTGGGAAAAGTGAGAATGAAAAGAAAGCTTCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCAATGAAATTCGGGGTAAAAAGATGCAAGCCTCAGGTGGTTATTTGCGAAATCTGTCTCGATCCTTATTTTGTTGAAGACCCCCATTGCAATTCCTGCCACCGCACATTTCCGTCAAATAATGTATTTAATTTTTCTAAACATGCTTTTCAATGTGTTGCCAATTTATCCAAAGATATTTGTATTTTGGAACATTCTCTTCCCATGAGGACAAGATTGCTTAAGATCCTACTGTCATATATGGAGGCTTCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAACTGATTTTAGGAAGCATTGGGGTGTCAAGTTGAGTAAATCATCATCTGTCGAGGAACTTTTACAGATGTTGACCCTATTTGAAAAAGCACTAAAGCGAGATTTTCTGTCACCAAACTTCTCTACAACAGACGAATTGTTGGGATTATGCAAAATGTCAGAAAGGGCTGCACATGCATCTGCTGATCCTGAATCAGTTGATTTACTTCCATGGGTTCCGCAAACTACTGCAGCATTGTCTCTCAGGCTATTTGAGTTTGATTCATCCATTAGCTATGTAAAGCTTGAGAGACTTGAGCCTGTTGAAGAGAAAGAAGCAAGAGAATACATTAAACTTCCATCAAGATATACTCCCTTCAAGCCTAATAGAGAGGTTGAGCCAGCAGCTCTTGATCATGATGCATTCACCAAAGTTAAATCTCCTACTAATAAAATTGTTCGTAGTGGAAATAAACGTGGACGAGGGGCTAGTGATTATGGGAGGCCGAAAAAGCTGTCTAAAAGAATGTACAATTCCAAACGAGATACTGGCCGTCGAAACGTTAATGTCACCGAGAATCTAAGTCAGAAATTAAGACTGCAGGGACGAGGAACACCAGGACAAGGGGGTGGACGAGGTCGTCGAACGGTCAGGAAACGTAGATTAGAAAAGAGAGCTGTTGAAGGTTTGTTGCTGGGCCATGCAGCAACTGGTTATAGCTCCAAGAGTGGTAAAGAACCATTGAGAAGTTTTGATGAAGAATGGAATGTAGAAAAAGCAAGTTCCATGACTCCTGTTCACATTGGGGTTTCTGAAAATAGTATCAGTGTCGAAGAGATGGAATCTGATGATAATGCTCTAGGAATGGAGTCTTATGATAATGCTCAAGGAGTGGAGTCTTATGATAATGCTCAAGGAATGGAATCTGATTATAATGCTCAAGAAATGGAATATGATGATAATGCTCAAGCAGTGGAATCTGATGATAATGCTCAAGCAGTAGAATATGATCACGGAAACTGGGAGATAGGTTATAATGGCGTCTCCCCTAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGATGTGGATGCTTTTGAAGATGACAATGACAATGGCAATGTCAATGGTTTTGAAGAAAATTTCGAGGAAGATTCCGAGGAAGATGTTATGAGTGAAGGTTTGGATCACATGGCTAATAGAGTAGTGAATATAGGAGGCTCAGATTTGTCTGTCTCTGAAGATTCTTCTGATTAA 5445 0.414 MEEEAENNTQKVEDGGENSNENFNNSKIMSSSEGQSKPKRQMKTPFQLETLEKAYALETYPSEATRVELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKPRKVPPLLDSTTNELNPKLVIEPCNEYGSGSGSGSSPVTRPELRNVVPRSYYESPQSIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLVVAEQQKRPSLPYDSKIYERHEVRTNKAMTRTFPEYTFVPNQSSIRSETFEQLSQPHLYDPLEGPTRTPSFPIGNEHLPRIHATQGHSSRTRLSSQQDKQVNPYTSPPPLLSQPNKQLIPFPSPPRDNDVVPNREPHSDIVIASMNSQFTDHQIVGQENLIALPGVQVSHNDAVLRVEKKRKSDDARVAKEVEAYEMRMKKELEKQDILRKKNEERMRKEMERQDRERKKEEERLMRERQREEERSKREQRREIERREKYLMKEHLRAEKRKQKEEIRREKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAVSNGLTSIIHIDLDTLQNLESFRDSLCVFPPKSVKLKKPFAILPWINSEQDVGNLFMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIQNWQKNLNQLTWPEILRQLALSAGLGPQLRKRSITWSYANDKDEGRSGEDVISTLRNGSAAVTAVAKMREKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRSAFRKDPAESESILSEARKKIQIFENGFLAGEDADDVEREESESDEVDEDPEEDDLVNPSSGNPHSEQYDDMNICSVNVKANLGHDVDFIQNELDTDLRCFPENGSKDADCSSSLTKQPVARENVNTGNLDDDIMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRIVLEDRLESANALKKQMWAEAQIDKIRLKDDYVGKLDYPSLTGNKFETQDTYPAVEGNHSPLLNININNIKNEAFPSTTENQKGAPSAQSVLTEKPSTVQDFCTGTGPDNFQTQVAAPYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGSWRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKTTQYDKIGSVEEGSVKTEADETYPVRECHSGPDSPSSTLHDLNSGTLETSSSFKVELGKSENEKKASLRRYQDFQKWMWKECYNSSILCAMKFGVKRCKPQVVICEICLDPYFVEDPHCNSCHRTFPSNNVFNFSKHAFQCVANLSKDICILEHSLPMRTRLLKILLSYMEASVLSEAFGTIWTTDFRKHWGVKLSKSSSVEELLQMLTLFEKALKRDFLSPNFSTTDELLGLCKMSERAAHASADPESVDLLPWVPQTTAALSLRLFEFDSSISYVKLERLEPVEEKEAREYIKLPSRYTPFKPNREVEPAALDHDAFTKVKSPTNKIVRSGNKRGRGASDYGRPKKLSKRMYNSKRDTGRRNVNVTENLSQKLRLQGRGTPGQGGGRGRRTVRKRRLEKRAVEGLLLGHAATGYSSKSGKEPLRSFDEEWNVEKASSMTPVHIGVSENSISVEEMESDDNALGMESYDNAQGVESYDNAQGMESDYNAQEMEYDDNAQAVESDDNAQAVEYDHGNWEIGYNGVSPNRWNRDLVGMSDEDVDAFEDDNDNGNVNGFEENFEEDSEEDVMSEGLDHMANRVVNIGGSDLSVSEDSSD 1814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1763 1787 - -
Vifa1g10429 1814 Gene3D - 22 95 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1555 1580 - -
Vifa1g10429 1814 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 846 868 - -
Vifa1g10429 1814 ProSiteProfiles DDT domain profile. 564 623 IPR018501 -
Vifa1g10429 1814 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1135 1207 IPR028941 -
Vifa1g10429 1814 SUPERFAMILY Homeodomain-like 22 93 IPR009057 -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 254 331 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1238 1260 - -
Vifa1g10429 1814 Coils Coil 389 454 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 12 43 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 279 303 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 304 326 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1 47 - -
Vifa1g10429 1814 Pfam DDT domain 565 620 IPR018501 -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1546 1580 - -
Vifa1g10429 1814 CDD homeodomain 39 94 IPR001356 GO:0003677
Vifa1g10429 1814 SMART HOX_1 36 98 IPR001356 GO:0003677
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 844 882 - -
Vifa1g10429 1814 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 954 997 IPR028942 -
Vifa1g10429 1814 ProSiteProfiles HARE-type HTH domain profile. 745 814 IPR007759 GO:0006355
Vifa1g10429 1814 Pfam Homeodomain 37 93 IPR001356 GO:0003677
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 1592 1613 - -
Vifa1g10429 1814 SMART testlast3 564 623 IPR018501 -
Vifa1g10429 1814 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 22 1813 IPR044977 GO:0006357
Vifa1g10429 1814 Coils Coil 460 495 - -
Vifa1g10429 1814 MobiDBLite consensus disorder prediction 405 448 - -
Vifa1g10429 1814 Pfam HB1, ASXL, restriction endonuclease HTH domain 745 813 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10429 Vifa-Chr1 1742641748 1742650184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10429 30 1699 Homeobox Transcription Factor Family AT1G28420 49.192 0.0 1325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g10429 WSD 5.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10429 - - psat:127081735 3077.34