Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10428 ATGGAGGAAGAAGCAGAGAATAATACTCAGAAGGTTGAAGATGGAGGTGAAAATAGCAATGAGAATTTCAACAACAGTAAAATTATGAGTTCCAGTGAAGGTCAAAGCAAGCCCAAGCGTCAGATGAAAACCCCTTTTCAGCTTGAAACGCTGGAGAAAGCTTATGCTTTGGAAACTTACCCGTCGGAGGCTACTAGGGTGGAGTTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCGTCTAAGAAGCCACGGAAGGTGCCACCTTTGCTTGATTCTACTACTAATGAACTTAACCCCAAGTTGGTTATTGAACCTTGTAACGAATATGGATCCGGGTCGGGTTCTGGGTCTAGTCCGGTGACACGACCGGAGTTGCGAAATGTGGTGCCTCGGAGTTACTATGAGTCGCCACAGAGTATTATGGAGCTTAGAGCTATTGCTTGTGTGGAAGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCTATTTTGGGAATTGAGTTTGATCCATTGCCGCCGGATGCATTTGGGGCACCCTTAGTTGTTGCAGAACAGCAGAAGCGGCCTAGTCTTCCCTACGACAGTAAAATATATGAAAGACATGAAGTTAGAACGAACAAGTCCAGCATTAGGTCTGAGACGTTTGAGCAATTGAGTCAACCTCATTTATATGATCCACTGGAGGGTCCTACAAGAACTCCTTCTTTTCCGATTGGAAATGAACATCTACCTAGAATACATGCTACTCAAGGCCATTCTTCCCGTACTCGCCTTTCGTCTCAACAGGATAAGCAAGTGAATCCCTATACTTCCCCTCCTCCCCTTTTGTCTCAACCGAACAAGCAATTGATTCCCTTTCCGTCTCCTCCTCGAGATAATGATGTTGTCCCCAATAGGGAACCTCATTCAGACATAGTCATTGCTAGCATGAACTCCCAATTTACTGATCACCAAATTGTTGGACAAGAAAATCTTATAGCTTTGCCTGGTGTACAAGTTTCCCATAATGATGCAGTATTGCGGGTGGAGAAGAAACGAAAGAGTGATGATGCCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGAAGAAAGAACTTGAGAAACAAGATATCCTAAGAAAAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAGACAAGATCGTGAGAGAAAGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGGCGCGAGATAGAACGAAGGGAAAAATATTTGATGAAAGAACATTTAAGAGCTGAGAAAAGAAAGCAAAAAGAAGAGATTCGCAGAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAAAAGGCAAATGCTCGTAGAATAGCCAAAGAATCTATGGAGCTCATTGAGGATGAACAGCTTGAATTGATGGAGTTGGCTGCAGTAAGCAATGGGCTTACCTCTATTATCCATATTGATCTTGATACCTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCCAAAAGTGTAAAGCTAAAAAAACCATTTGCTATTCTGCCCTGGATCAACTCGGAACAAGATGTTGGCAACCTTTTCATGGTTTGGAGATTTTTGATTACCTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAATTCGTGCAAGCTTTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACAAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCGCTATCTGCAGGATTGGGACCACAGTTGAGAAAAAGAAGTATTACTTGGTCATATGCAAATGATAAAGATGAGGGAAGAAGCGGCGAAGATGTCATTTCAACACTTCGTAATGGTTCAGCAGCTGTAACTGCAGTGGCAAAAATGCGAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACACAGGTTAACTCCAGGAACTGTTAAATTCGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGAGCTTGCTGAAAAGATTCAGAAATCTGGTCTCCGTGACCTGACGACCAGCAAAACACCTGAAGCATCAATTTCAGTTGCTTTGACAAGAGATGGAAAACTTTTCGAAAGGATAGCTCCATCAACATATCGTGTACGAAGTGCATTTAGAAAGGATCCTGCTGAATCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGATGACGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGAGGATGATTTGGTTAATCCTTCAAGTGGAAACCCACATTCAGAACAATATGATGACATGAACATTTGCTCAGTAAATGTAAAAGCAAATTTGGGCCATGATGTAGACTTTATTCAAAATGAGCTTGATACCGATCTTCGTTGTTTTCCTGAAAATGGTTCCAAGGATGCCGATTGTTCCAGTTCTCTCACCAAACAACCAGTTGCTCGTGAAAATGTAAATACTGGAAATCTTGATGATGATATTATGGAAATCGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTCACCGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTATTGTTCTTGAGGATCGATTGGAATCAGCAAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAATTAGGCTAAAAGATGATTATGTTGGTAAATTAGATTACCCTTCACTTACTGGAAATAAATTTGAAACACAAGACACATATCCTGCTGTTGAGGGAAACCATAGTCCATTGCTCAACATCAATATTAACAACATTAAGAATGAAGCATTCCCCAGCACTACAGAAAACCAAAAAGGAGCTCCTTCTGCACAGAGCGTACTTACTGAAAAGCCATCAACAGTTCAAGATTTCTGCACAGGCACAGGTCCAGACAACTTTCAGACTCAGGTAGCTGCACCGTATTCAAAAAGGTCACGGTCACAGTTGAAGTCCTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGACCGCAGGCGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGTAATGACCCTGGTTCTGGCAGGATCTTTGTTGAACATCATGACGGCAGTTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATATTCTTTTGACATCACTGGATTCACGCGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAACTACACAATATGACAAAATTGGAAGCGTAGAGGAAGGTTCTGTTAAAACTGAAGCTGATGAAACATATCCAGTGCGTGAGTGCCATTCAGGACCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACTCTGGTACATTAGAAACTTCATCATCCTTCAAAGTTGAGCTTGGGAAAAGTGAGAATGAAAAGAAAGCTTCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCAATGAAATTCGGGGTAAAAAGATGCAAGCCTCAGGTGGTTATTTGCGAAATCTGTCTCGATCCTTATTTTGTTGAAGACCCCCATTGCAATTCCTGCCACCGCACATTTCCGTCAAATAATGTATTTAATTTTTCTAAACATGCTTTTCAATGTGTTGCCAATTTATCCAAAGATATTTGTATTTTGGAACATTCTCTTCCCATGAGGACAAGATTGCTTAAGATCCTACTGTCATATATGGAGGCTTCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAACTGATTTTAGGAAGCATTGGGGTGTCAAGTTGAGTAAATCATCATCTGTCGAGGAACTTTTACAGATGTTGACCCTATTTGAAAAAGCACTAAAGCGAGATTTTCTGTCACCAAACTTCTCTACAACAGACGAATTGTTGGGATTATGCAAAATGTCAGAAAGGGCTGCACATGCATCTGCTGATCCTGAATCAGTTGATTTACTTCCATGGGTTCCGCAAACTACTGCAGCATTGTCTCTCAGGCTATTTGAGTTTGATTCATCCATTAGCTATGTAAAGCTTGAGAGACTTGAGCCTGTTGAAGAGAAAGAAGCAAGAGAATACATTAAACTTCCATCAAGATATACTCCCTTCAAGCCTAATAGAGAGGTTGAGCCAGCAGCTCTTGATCATGATGCATTCACCAAAGTTAAATCTCCTACTAATAAAATTGTTCGTAGTGGAAATAAACGTGGACGAGGGGCTAGTGATTATGGGAGGCCGAAAAAGCTGTCTAAAAGAATGTACAATTCCAAACGAGATACTGGCCGTCGAAACGTTAATGTCACCGAGAATCTAAGTCAGAAATTAAGACTGCAGGGACGAGGAACACCAGGACAAGGGGGTGGACGAGGTCGTCGAACGGTCAGGAAACGTAGATTAGAAAAGAGAGCTGTTGAAGGTTTGTTGCTGGGCCATGCAGCAACTGGTTATAGCTCCAAGAGTGGTAAAGAACCATTGAGAAGTTTTGATGAAGAATGGAATGTAGAAAAAGCAAGTTCCATGACTCCTGTTCACATTGGGGTTTCTGAAAATAGTATCAGTGTCGAAGAGATGGAATCTGATGATAATGCTCTAGGAATGGAGTCTTATGATAATGCTCAAGGAGTGGAGTCTTATGATAATGCTCAAGGAATGGAATCTGATTATAATGCTCAAGAAATGGAATATGATGATAATGCTCAAGCAGTGGAATCTGATGATAATGCTCAAGCAGTAGAATATGATCACGGAAACTGGGAGATAGGTTATAATGGCGTCTCCCCTAACAGATGGAATAGGGATTTGGTTGGAATGAGTGATGAAGATGTGGATGCTTTTGAAGATGACAATGACAATGGCAATGTCAATGGTTTTGAAGAAAATTTCGAGGAAGATTCCGAGGAAGATGTTATGAGTGAAGGTTTGGATCACATGGCTAATAGAGTAGTGAATATAGGAGGCTCAGATTTGTCTGTCTCTGAAGATTCTTCTGATTAA 5400 0.4139 MEEEAENNTQKVEDGGENSNENFNNSKIMSSSEGQSKPKRQMKTPFQLETLEKAYALETYPSEATRVELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKPRKVPPLLDSTTNELNPKLVIEPCNEYGSGSGSGSSPVTRPELRNVVPRSYYESPQSIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLVVAEQQKRPSLPYDSKIYERHEVRTNKSSIRSETFEQLSQPHLYDPLEGPTRTPSFPIGNEHLPRIHATQGHSSRTRLSSQQDKQVNPYTSPPPLLSQPNKQLIPFPSPPRDNDVVPNREPHSDIVIASMNSQFTDHQIVGQENLIALPGVQVSHNDAVLRVEKKRKSDDARVAKEVEAYEMRMKKELEKQDILRKKNEERMRKEMERQDRERKKEEERLMRERQREEERSKREQRREIERREKYLMKEHLRAEKRKQKEEIRREKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAVSNGLTSIIHIDLDTLQNLESFRDSLCVFPPKSVKLKKPFAILPWINSEQDVGNLFMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIQNWQKNLNQLTWPEILRQLALSAGLGPQLRKRSITWSYANDKDEGRSGEDVISTLRNGSAAVTAVAKMREKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRSAFRKDPAESESILSEARKKIQIFENGFLAGEDADDVEREESESDEVDEDPEEDDLVNPSSGNPHSEQYDDMNICSVNVKANLGHDVDFIQNELDTDLRCFPENGSKDADCSSSLTKQPVARENVNTGNLDDDIMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRIVLEDRLESANALKKQMWAEAQIDKIRLKDDYVGKLDYPSLTGNKFETQDTYPAVEGNHSPLLNININNIKNEAFPSTTENQKGAPSAQSVLTEKPSTVQDFCTGTGPDNFQTQVAAPYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGSWRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKTTQYDKIGSVEEGSVKTEADETYPVRECHSGPDSPSSTLHDLNSGTLETSSSFKVELGKSENEKKASLRRYQDFQKWMWKECYNSSILCAMKFGVKRCKPQVVICEICLDPYFVEDPHCNSCHRTFPSNNVFNFSKHAFQCVANLSKDICILEHSLPMRTRLLKILLSYMEASVLSEAFGTIWTTDFRKHWGVKLSKSSSVEELLQMLTLFEKALKRDFLSPNFSTTDELLGLCKMSERAAHASADPESVDLLPWVPQTTAALSLRLFEFDSSISYVKLERLEPVEEKEAREYIKLPSRYTPFKPNREVEPAALDHDAFTKVKSPTNKIVRSGNKRGRGASDYGRPKKLSKRMYNSKRDTGRRNVNVTENLSQKLRLQGRGTPGQGGGRGRRTVRKRRLEKRAVEGLLLGHAATGYSSKSGKEPLRSFDEEWNVEKASSMTPVHIGVSENSISVEEMESDDNALGMESYDNAQGVESYDNAQGMESDYNAQEMEYDDNAQAVESDDNAQAVEYDHGNWEIGYNGVSPNRWNRDLVGMSDEDVDAFEDDNDNGNVNGFEENFEEDSEEDVMSEGLDHMANRVVNIGGSDLSVSEDSSD 1799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10428 1799 Gene3D - 22 95 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 390 433 - -
Vifa1g10428 1799 Pfam DDT domain 550 605 IPR018501 -
Vifa1g10428 1799 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1531 1565 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 829 867 - -
Vifa1g10428 1799 SUPERFAMILY Homeodomain-like 22 93 IPR009057 -
Vifa1g10428 1799 Coils Coil 445 480 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 289 311 - -
Vifa1g10428 1799 Pfam HB1, ASXL, restriction endonuclease HTH domain 730 798 IPR007759 GO:0006355
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 264 288 - -
Vifa1g10428 1799 SMART testlast3 549 608 IPR018501 -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 12 43 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1577 1598 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1 47 - -
Vifa1g10428 1799 CDD homeodomain 39 94 IPR001356 GO:0003677
Vifa1g10428 1799 SMART HOX_1 36 98 IPR001356 GO:0003677
Vifa1g10428 1799 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 982 IPR028942 -
Vifa1g10428 1799 ProSiteProfiles HARE-type HTH domain profile. 730 799 IPR007759 GO:0006355
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1540 1565 - -
Vifa1g10428 1799 Pfam Homeodomain 37 93 IPR001356 GO:0003677
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 831 853 - -
Vifa1g10428 1799 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 22 1798 IPR044977 GO:0006357
Vifa1g10428 1799 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1223 1245 - -
Vifa1g10428 1799 Coils Coil 374 439 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 222 316 - -
Vifa1g10428 1799 MobiDBLite consensus disorder prediction 1748 1772 - -
Vifa1g10428 1799 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1120 1192 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10428 Vifa-Chr1 1742641748 1742650184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10428 30 1684 Homeobox Transcription Factor Family AT1G28420 49.018 0.0 1316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g10428 WSD 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10428 - - psat:127081735 3035.74