Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10426 ATGGAGGAAGAAGTGGAGAATAATAGTCAGAAGGTTGAAGATGGAGGTGAAAATAGCAATGAGAATTTGAACAAGAGTAAAATTATGAGTTCCAGTGAAGTGGAAACTTACCTGTCGGAGGCTACTAGGGTGGAGTTATCGGATCGGCAGTTACAGATGTGGTTCTGTCACCGGCGGTTGAAAGACAAGGAGTTACCGTCTAAGAAGTTGCCAGCTTCGCCGGATTCTGCTACTGATGAACTTAGAGCAGTTGCTTGTGTGGAAGCAAAGTTAGGGGAGCCTTTGAGGGAAGATGGACCTATTCCGGGAGTTGAGTTTGATCCATTGCCACCGGATGCATTTGGGGCACCCTTAGCTGTTGCAGAACAGCAGAAGCAGCCTGGTCTTGCCTATGACACTAAAATATATAAAAGACACCAAGTTAGAACGAATAAGGCAATGACAAGGACATTCCCTGAACATACATTTGTTCCGAACCCGCCCAGCATTAGGTCTGACACGTTTGAGCAATTAAGTCAACCTCATTTATATGATCCAATGAAGGGTCCTACCAAAACTCCTCCTTTTCCGATTGGAAATGATCATCTACCTAGAATTCATAATACTCGAAGCCATTCTTCCCGTGCTCGCCATTCTTCCCATGCTTCTTCCCGTGCTCGCCATTCGTCTCAACAGGATATGCAAGTGAATCCCTATAATGATGCGGTATTACGGGTGGAGAAGAAACGAAAGAGTGATGATGCCAGAGTTGTAAAGGAAGTTGAAGCCTATGAAATAAGGTTGAAGAAAGAACTTGAGAAACAAGTTATCCTAAGAAAAAAGATTGAAGGACGAATGAGGAAAGAAATGGGAAGACAAGATTGTGAGAGAAAGAAGGAAGAAGAGAGGCTGATGCGCGAGAGACAGCGAGAAGAGCAACGATCAAAGCGTGAGCAAAGGATAGAACGAAGGGAAAAATATTTGATGAAAGAACATTTAAGGGGTAGAAGTGGCGAAGATGTCATTTCAACACTTCGTAATGGTTCAGCAGCTGTAAGTGCAGTGGCTAAAATGCGAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACACAGGTTAACTCCAGGAACTGTTAAATTCGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGAGCTTGCAGAAAAGATTCAGAGTTCTGATCTTCATGATCTGACGACCAGCAAAACACCTGAAGCATCAATTTCGGTTGCTTTGGCTAGAGATGACAAACTTTTTGAAAGGATTACTCCATCAACATATTGTGTACGAACTGCATTTAGAAAGGATCCTACTGACTCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGTAGATGCTGATGATGTTGAAAGAGAAGAGTCGGAAAGTGATGAAGTTGATGAGGATCCCGAAGAGGATGATTTGGTTATTCCTTCAAGTGGAAACCCAAATTCAGAACAATATGATGACATGAACATTTGCTCAGTAAATGTAAAAGCAAATTTGGGTCATGATGTAGACTTTATTCAAAATGAGCTTGATACCGATCTTCCTTGTTTTCCTGAGAATAGTTCCAAGGATGCTGATTGTTCCAGTTCTATCACCAGACAACCAGTTGCTTGTGAAAATGATCAATTGGAATCAGCAAATGCTCTGAAAAAGCAAATATGGGCAGAAGCGCAAATAGATAAAGTTCAGCTAAAAGATGATTATATTGGTAAATTAGATTACCCGTCACTTATTGGAAATAACTTTGAAACACAAGACACATATCCTGCTGTTGAGGGAAACCATAGCCCATTGCTCAACATCAATATTAACAAAGTTAAGAATGAAGCATCCCCCAGCACTACAGAAAAACAAAAAGGAGCTCCTTCTGCACATAACCTACTTATTGAAAAGCCATCAACAATTCAAGATTTCTGCACAGGCACAGGTCCAGACAACTTTCAGACACTTAATCTTCTGATGGAGAGCAATATCCGGTGGGATGATTTTCAGTGCAAAGCTCACAATAATTTTTTTTTCTAG 2082 0.4131 MEEEVENNSQKVEDGGENSNENLNKSKIMSSSEVETYLSEATRVELSDRQLQMWFCHRRLKDKELPSKKLPASPDSATDELRAVACVEAKLGEPLREDGPIPGVEFDPLPPDAFGAPLAVAEQQKQPGLAYDTKIYKRHQVRTNKAMTRTFPEHTFVPNPPSIRSDTFEQLSQPHLYDPMKGPTKTPPFPIGNDHLPRIHNTRSHSSRARHSSHASSRARHSSQQDMQVNPYNDAVLRVEKKRKSDDARVVKEVEAYEIRLKKELEKQVILRKKIEGRMRKEMGRQDCERKKEEERLMRERQREEQRSKREQRIERREKYLMKEHLRGRSGEDVISTLRNGSAAVSAVAKMREKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLELAEKIQSSDLHDLTTSKTPEASISVALARDDKLFERITPSTYCVRTAFRKDPTDSESILSEARKKIQIFENGFLAGVDADDVEREESESDEVDEDPEEDDLVIPSSGNPNSEQYDDMNICSVNVKANLGHDVDFIQNELDTDLPCFPENSSKDADCSSSITRQPVACENDQLESANALKKQIWAEAQIDKVQLKDDYIGKLDYPSLIGNNFETQDTYPAVEGNHSPLLNININKVKNEASPSTTEKQKGAPSAHNLLIEKPSTIQDFCTGTGPDNFQTLNLLMESNIRWDDFQCKAHNNFFF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10426 693 MobiDBLite consensus disorder prediction 283 312 - -
Vifa1g10426 693 Coils Coil 285 314 - -
Vifa1g10426 693 MobiDBLite consensus disorder prediction 12 34 - -
Vifa1g10426 693 MobiDBLite consensus disorder prediction 182 230 - -
Vifa1g10426 693 ProSiteProfiles HARE-type HTH domain profile. 369 438 IPR007759 GO:0006355
Vifa1g10426 693 MobiDBLite consensus disorder prediction 202 217 - -
Vifa1g10426 693 ProSiteProfiles 'Homeobox' domain profile. 41 65 IPR001356 GO:0003677
Vifa1g10426 693 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g10426 693 Pfam HB1, ASXL, restriction endonuclease HTH domain 369 437 IPR007759 GO:0006355
Vifa1g10426 693 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 559 669 IPR044977 GO:0006357
Vifa1g10426 693 MobiDBLite consensus disorder prediction 472 492 - -
Vifa1g10426 693 MobiDBLite consensus disorder prediction 470 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10426 Vifa-Chr1 1742271394 1742275107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10426 35 64 Homeobox Transcription Factor Family AT1G28420 72.222 1.09e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10426 - - psat:127081735 505.753