Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10421 ATGTCTCTTCTGTTTCTCTTTCTCTCTTTCATTCTCCTTCAACGAGTTTCCTCTCTCAACCAAGAAGGTCTCTACCTGTACCAATTCAAGCTCTCCTTAGACGATCCTGAGTCTTCCCTCTCCTCATGGAACAACCGCGACCAAACACCGTGTAACTGGTCCGGCATAACCTGCAACAACGAAACAACCACCGCCGTGACTCAAATCAACCTCTCCAACTTCAACCTCGCCGGTCCATTACCAACCTCAATCCTCTGTCGTTTAACCAATCTCACCACCCTCATTCTCACCAACAACTCCATCAACCAAACACTACCTCCAGAAATTTCTCTCTGCACCTCCCTTACTCATTTAGACCTCTCTCAAAATCTCCTCACCGGCACACTCCCACAGACCCTACCTCTCCTCACTAACCTCCGTTATCTCGACTTAACGGCTAACAACTTCTCCGGCTCAATCCCCAACTCCTTCGGAACATTCCAGAATCTTCAAGTTATCTCTCTCGTTTACAATCTTCTAGAATCTTCCATTCCTGCTTCTTTAGGAAACATCACCACTCTCAGAACGCTCAATCTCTCTTATAACCCTTTTCAACCTTCTCGGATTCCGCCGGAAATCGGAAACCTAACAAACCTCCAGATTCTCTGGCTTAGTTCATGTAATCTCATTGGTATTATTCCTGACACATTCGGGAATTTGAAGAGACTCACTGTGCTTGATCTTTCCATGAATAATCTTGAAGGTTCTATTCCGAGTTCGCTTGCTTTGATGACGAGTTTGAAGCAGATTGAGCTTTATAATAACTCGTTGTCCGGTGAGTTACCTTCCGGAATGTCGAACCTTACTTCGTTGAGGCTCATTGATGTTGCTATGAATAGTATTGGAGGTGTTATTCCCGATGAGTTGTGCCGTTTACCGCTTGAGAGTCTGAATCTCTATGAAAATCGGTTTACCGGTGATTTGCCGGCCAGTATAGCTGAATCTCCAAATCTCTACGAGTTTAAGATTTTTACGAACTTTTTATCCGGTGAGTTGCCGGAGAATCTCGGGAAGAATGGTCCGTTGATATGGTTTGATGTTTCAAATAATTCATTCTCCGGGAAGATTCCGATGAGCCTGTGCGAGCGCGGCGCATTGGAGGAGTTACTGATGATACATAATTCGTTCTCAGGTGATATTCCAGCGAGTTTGGGTGCTTGTAGAAGTTTGACGCGTGTTAGGTTGGGTTTTAATAATTTGTCCGGACAAGTTCCGGCGGGTTTGTGGGGCTTACCGCATGTGTATCTTCTTGAACTTGTTGACAACTTGTTTACTGGTTCAATTGCTAAGACCATTGGTGGTGCTGGGAATCTGTCTTTGTTGATTGTATCGAATAATAAATTCTCCGGTTCGATTCCTGAAGAGATTGGAAGATTGGAAAGTCTTCAGGAGTTTTCTGGTGGTAATAACCAGTTCAACAATTCGTTGCCTGAGAGTATTGTGAATCTCTCCCAGCTTGGGATTCTTGATCTTCACAACAATAAGATTTCTGGTGAGCTTCCGAAAGGAATTCCATCTCTTAAGAAACTCAACGAGTTGAATTTGGCTAATAATGAGATTGGTGGGAAGATTCCTGAGAAAATTGGCAGTATGTCCGTGCTTAACTTTCTTGATCTTTCCAGTAATCGGTTTTCGGGTAATGTTCCGATGAGTTTGCAGAATTTGAAGCTCAATCAGCTGAATTTGTCTTACAATTTGCTTTCTGGAGAGATTCCACCTCTTATGGCCAAGGCTATGTATAGGGATAGTTTTATCGGTAATCCTGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGTCAAAGGAGAAGGGAAGAGTGCTAATTTTGTTTGGCTGCTTAGAGCTATTTTCATAGTTGCAGCTTTGGTTTTTGTCTTTGGTGTGGTTTGGTTCTACTTCAAGTACAGGAATATTAAGAAGGCTAGATCTATTGATAAAACCAAATGGACATTGATGTCATTTCATAAACTGGGTTTTGGTGAAGATGAGGTCTTGAATTGCCTTGATGAAGATAATGTCATTGGAAGTGGATCATCCGGGAAAGTCTACAAGGTTGTGCTTCGCAACGGGGAAGCTGTTGCAGTGAAGAAGATATGGGGAGGGGTTCAAATGGAAACGGAGAGTGGAGATACTGAAAAGAAACAATTTCAAGATAATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTTAAACTATGGTGTTGTTGTACCACTAGGGATTGCAAGCTATTGGTTTACGAGTATATGCCAAATGGTAGTCTTGGTGATTTGCTGCATAGCAATAAAGGAGGATTGTTAGATTGGCCGACTAGGTACAAGATAGCTCTTGATTCTGCAGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCTCCTATAGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGAAGACTTTAGTGCAAAGGTTGCAGATTTTGGGTTAGCTAAGGCGGTTGAAACCAATGGGAAAGGAACTAAATCCATGTCCGTCATAGCTGGTTCTTGTGGTTATATTGCACCAGAATATGCATACACACTTAGAGTGAACGAGAAGAGTGACACATATAGTTTTGGTGTTGTTATCCTTGAGTTAGTCACTGGAAGGAAGCCGGTAGATCCCGAATTCGGAGAAAAAGACTTAGTTATGTGGGCATGCAACACCTTAGATCAGAAAGGTATCGACCACGTGCTTGACTCGAGGCTTGATTCTTTCTACAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTAATGTGCACGAGTCCTCTTCCAATCAACCGGCCCGGAATGAGAAGAGTGGTGAAAATGCTACAAGAGGTAGGCCCTGAAAGCCAATCAAAGTCTTCCCTAAAAGCAGGAAAGTTGTCCCCTTATTACTATGATGATGGGTCAGATCATGGAAGTGTTGCTTAA 2985 0.4265 MSLLFLFLSFILLQRVSSLNQEGLYLYQFKLSLDDPESSLSSWNNRDQTPCNWSGITCNNETTTAVTQINLSNFNLAGPLPTSILCRLTNLTTLILTNNSINQTLPPEISLCTSLTHLDLSQNLLTGTLPQTLPLLTNLRYLDLTANNFSGSIPNSFGTFQNLQVISLVYNLLESSIPASLGNITTLRTLNLSYNPFQPSRIPPEIGNLTNLQILWLSSCNLIGIIPDTFGNLKRLTVLDLSMNNLEGSIPSSLALMTSLKQIELYNNSLSGELPSGMSNLTSLRLIDVAMNSIGGVIPDELCRLPLESLNLYENRFTGDLPASIAESPNLYEFKIFTNFLSGELPENLGKNGPLIWFDVSNNSFSGKIPMSLCERGALEELLMIHNSFSGDIPASLGACRSLTRVRLGFNNLSGQVPAGLWGLPHVYLLELVDNLFTGSIAKTIGGAGNLSLLIVSNNKFSGSIPEEIGRLESLQEFSGGNNQFNNSLPESIVNLSQLGILDLHNNKISGELPKGIPSLKKLNELNLANNEIGGKIPEKIGSMSVLNFLDLSSNRFSGNVPMSLQNLKLNQLNLSYNLLSGEIPPLMAKAMYRDSFIGNPGLCGDLKGLCDVKGEGKSANFVWLLRAIFIVAALVFVFGVVWFYFKYRNIKKARSIDKTKWTLMSFHKLGFGEDEVLNCLDEDNVIGSGSSGKVYKVVLRNGEAVAVKKIWGGVQMETESGDTEKKQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALDSAEGLSYLHHDCVPPIVHRDVKSNNILLDEDFSAKVADFGLAKAVETNGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDTYSFGVVILELVTGRKPVDPEFGEKDLVMWACNTLDQKGIDHVLDSRLDSFYKEEICKVLNIGLMCTSPLPINRPGMRRVVKMLQEVGPESQSKSSLKAGKLSPYYYDDGSDHGSVA 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10421 994 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 186 963 - -
Vifa1g10421 994 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 978 - -
Vifa1g10421 994 ProSiteProfiles Leucine-rich repeat profile. 235 257 IPR001611 GO:0005515
Vifa1g10421 994 FunFam Receptor-like protein kinase HSL1 665 768 - -
Vifa1g10421 994 SMART serkin_6 681 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10421 994 Gene3D Ribonuclease Inhibitor 200 306 IPR032675 -
Vifa1g10421 994 Gene3D Transferase(Phosphotransferase) domain 1 769 982 - -
Vifa1g10421 994 Pfam Protein kinase domain 683 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10421 994 SUPERFAMILY RNI-like 307 591 - -
Vifa1g10421 994 PRINTS Leucine-rich repeat signature 233 246 - -
Vifa1g10421 994 PRINTS Leucine-rich repeat signature 115 128 - -
Vifa1g10421 994 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 181 - -
Vifa1g10421 994 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Vifa1g10421 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Vifa1g10421 994 Pfam Leucine rich repeat 210 270 IPR001611 GO:0005515
Vifa1g10421 994 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
Vifa1g10421 994 ProSiteProfiles Protein kinase domain profile. 681 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10421 994 SUPERFAMILY Protein kinase-like (PK-like) 677 961 IPR011009 -
Vifa1g10421 994 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Vifa1g10421 994 FunFam Receptor-like protein kinase HSL1 306 613 - -
Vifa1g10421 994 MobiDBLite consensus disorder prediction 968 994 - -
Vifa1g10421 994 Gene3D Ribonuclease Inhibitor 307 616 IPR032675 -
Vifa1g10421 994 SMART LRR_typ_2 520 544 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 136 162 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 496 519 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 184 208 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 88 112 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 233 256 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 209 232 IPR003591 -
Vifa1g10421 994 SMART LRR_typ_2 257 281 IPR003591 -
Vifa1g10421 994 Gene3D Phosphorylase Kinase; domain 1 666 768 - -
Vifa1g10421 994 SUPERFAMILY L domain-like 35 374 - -
Vifa1g10421 994 Gene3D Ribonuclease Inhibitor 18 199 IPR032675 -
Vifa1g10421 994 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 182 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10421 Vifa-Chr1 1741237316 1741240460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10421 16 994 Receptor kinase-like Gene Family AT1G28440 67.241 0.0 1362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g10421 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10421 - - gmx:100776936 1499.18