Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10419 ATGAACCTTGTTGAACATATTACTTATGACACAATCATGGCAACTCTATCAATATCTCTCATAATTCTTGCTATCATCCTCTTTTTCCTTTGCAAAAAGAAACCAGTTGAATCGGAAGAAACACTTCCAACGAAACACAGTGCTCGTGCATACCCTTTAATAGAAATTGATGCTGCTACAAATGGCTTCAACCACAGGAGAATCATCGGAAAAGGTCGTTTAGGAACAGTTTATGTAGGGAAACTAGTATCAGAAGAACTCGTAGCTGTGAAACGCATTCACCCTGTTCTTGTATTAAGCAACGCAGGATTTGGTTTCTCATCAGTGATCAAATGGCTCTCTTTAGCTCATCACCCTAACGTTGTTCCTATAATAGGATTCTCAGAAGCACCAGGTGAAAGAATTATAGTGATGGAGTTTGTTCAAACGGCGAATTTGGAGTTTTACTTGCATGAAAATAATGATGGAGTTTCTTCTTCACTATTGGATTGGAACAAGAGGTTTAAGATTGCAGCTGGAGTAGCGAAAGGACTAGAATATCTTCATGAAGTGGTAGCACCAAATATAGTACATGGGTCAATTGAAAAAAGAGGGTTAATTGGTTACGTGGATGATGAGTATTGGAATGGTGGGGTTTGTAAGGAAAGTGATGTTTATGGGTTAGGGGTAATTTTGTTGGAGCTTTTGAGTGGAAGAGGGTGTGAGAGTGGAGTATTGGTGAAATGGGCATTGCCTTTGATTAAGGATATGAGATTTAGTGAAGTTTTGGATCCTAAGTTGATGATTCCTAGTGATATGAAAGCTATTGTTAGATTAGCAAAAGTTGCTGTAGCATGTGTTGGTAATTCAAGGAAATGTAGGCCTTGTGTGAATCATGTGGCAACCATTTTGAATGATTTAGAGATGGAAGTTTGTTTCTTATCAAATTAG 930 0.3806 MNLVEHITYDTIMATLSISLIILAIILFFLCKKKPVESEETLPTKHSARAYPLIEIDAATNGFNHRRIIGKGRLGTVYVGKLVSEELVAVKRIHPVLVLSNAGFGFSSVIKWLSLAHHPNVVPIIGFSEAPGERIIVMEFVQTANLEFYLHENNDGVSSSLLDWNKRFKIAAGVAKGLEYLHEVVAPNIVHGSIEKRGLIGYVDDEYWNGGVCKESDVYGLGVILLELLSGRGCESGVLVKWALPLIKDMRFSEVLDPKLMIPSDMKAIVRLAKVAVACVGNSRKCRPCVNHVATILNDLEMEVCFLSN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10419 309 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Vifa1g10419 309 SUPERFAMILY Protein kinase-like (PK-like) 38 296 IPR011009 -
Vifa1g10419 309 PANTHER OS01G0253100 PROTEIN 197 300 - -
Vifa1g10419 309 ProSiteProfiles Protein kinase domain profile. 63 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10419 309 Pfam Protein tyrosine and serine/threonine kinase 66 196 IPR001245 GO:0004672|GO:0006468
Vifa1g10419 309 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Vifa1g10419 309 Gene3D Transferase(Phosphotransferase) domain 1 196 305 - -
Vifa1g10419 309 Gene3D Transferase(Phosphotransferase) domain 1 142 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10419 Vifa-Chr1 1741156187 1741157455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10419 40 297 Receptor kinase-like Gene Family AT3G59420 32.886 1.03e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g10419 PK_Tyr_Ser-Thr 3.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10419 - - mtr:11441273 498.434