Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10418 ATGACTTGGTGCAATGACTCTGATGTTACTGATCACATAAAGCTCAGTGAAGAAATTCAAACCATAAAATGCCCCTCATGTGACCATGATATTGAAGTAAAAAATCAGGGTGGAATTCATGATTTGCCTGGTTTACCAGCTGGAGTGAAATTTGATCCTAATGACATAGAAATATTAGAGCATTTAGAGGCAAAAGTGATGTCTGATGTGTGCAAGATTCATCCACTTATTGATGAGTTCATACCAACACTTCAAGGAGAAAATGGAATTTGTTATACACACCCAGAAAAACTACCAGGAGTTGGCAAAGATGGACAAATTCGCCATTTCTTTCATAGGCCTTCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTCCACACTGATGAAGAAGGAGGTGAAACAAGATGGCACAAAACAGGAAAAACTAGAGCAATATTTGTTAATGGTATTGCCAAGGGTTTTAAAAAGATACTAGTACTCTACACAAACTATGGTAGGCAAGGAAAACCAGAGAAGACTAATTGGGTGATGCATCAATACCATATTGGTAGTAACGAAGAAGAAAAAGACGGAGAATTAGTTGCTTCAAAGGTGTTCTACCAAACACAACCAAGACAAAGTGGTAGTTCCATTAATGTAAGAGATTCATGTGACAAAATAATAAACAAAGGAAGTGGCCATAGTAATAATGCAACACCTAACTTAGGTCTTATGGAATGCTTCAATACGCCTTATACAAATTATGAGCATGTCCAAGTTGGTCATAATAGGGAAAGCTCGCCACAATTTGCTCCGAACATGGTTGTCCAAGGTGATCATGCATCTGTTATTCGCTCAGCAATGGATGCAAACAAACTAAGAGCAAATGAGAGAAAGTAA 888 0.3773 MTWCNDSDVTDHIKLSEEIQTIKCPSCDHDIEVKNQGGIHDLPGLPAGVKFDPNDIEILEHLEAKVMSDVCKIHPLIDEFIPTLQGENGICYTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGGETRWHKTGKTRAIFVNGIAKGFKKILVLYTNYGRQGKPEKTNWVMHQYHIGSNEEEKDGELVASKVFYQTQPRQSGSSINVRDSCDKIINKGSGHSNNATPNLGLMECFNTPYTNYEHVQVGHNRESSPQFAPNMVVQGDHASVIRSAMDANKLRANERK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10418 295 SUPERFAMILY NAC domain 39 204 IPR036093 GO:0003677|GO:0006355
Vifa1g10418 295 FunFam NAC domain-containing protein 73 54 208 - -
Vifa1g10418 295 Gene3D NAC domain 55 208 IPR036093 GO:0003677|GO:0006355
Vifa1g10418 295 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 17 231 IPR044799 GO:0003700
Vifa1g10418 295 Pfam No apical meristem (NAM) protein 46 185 IPR003441 GO:0003677|GO:0006355
Vifa1g10418 295 ProSiteProfiles NAC domain profile. 45 204 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10418 Vifa-Chr1 1740832511 1740845421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10418 1 214 NAC Transcription Factor Family AT4G28500 68.122 4.22e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g10418 NAM 3.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10418 - - gmx:100809389 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10418 1 1740832511 1740845421 Vifa1g10418 1 1740832511 1740845421 ECH