Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10409 ATGGGGTTAATCGATCTCAACACTACAGAAGATGATGAAACTGAAACTCCTTATTCTGCTATTTCTTCTTCCTCTTCTTCTACTCACTCTGGTATAAGCACTTCTGCTTCAGCTATGATTCTTCCTCCTTCTCCTCCTCCTCCGGCTCAACCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTCTGCCCAAGAAAGGAAGCATTGTTGTGTATGTTCCACAGGGTCACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAGTATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAAGTATTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTGCGCGAAGGGGTAATCAATGCTGATGCAGAAGAGGAGGATACGGAAGCTATTGTGAAGTCAACAACTCCACATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCGGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCATCACAAGAGCTTGTAGCTAAGGATCTGCATGGCCTGGAATGGAAGTTTCGGCACATTTACAGGGGGCAGCCAAGGAGGCATTTGCTGACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGGGATGCCGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGATTAGGGATCCGTAGGGCTGTTCAGTTGAAAAGTTCCGGTTCCTTTGCAGCTTCTGGCATGCAATTGGATCCTGGCCCTCTCATGGACGTTGTGAATGCTTTATCCAAAAGATCTGCGTTCAGTGTTTGCTACAATCCAAGGGTCAGTTCTTCAGATTTCATCATACCTGTTAACAAGTTCATAAAGAGCCTTGATTGTTCTTACTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGGATCACTGGATTAATTGCTGGAATAAGTGACGTGGATCCTCATAGATGGCCAGGATCAAAATGGAAATGCCTATTGGTGAGGTGGGATGACATAGAAGCATCAAGGCATAATAGGGTTTCCCCTTGGGAAATTGAGCCATCTGGTTCTGCTTCCTCTACCAGTAACCTGATGGCAGCAAGTTTGAAGAGGAGCAGGATTGGGTTCACTTCATCCAAGCTAGATTTTCCAGTTCCCAATGGGATTGGTGTGTCAGACTTTGGGGAATCATTGAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATTAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATTCGAGCTAGGGAGATGTTATCCCGGTTCTAACTGTTCCGGGATTGCCGCACCAGGAAACATCAGAATGCCTCAGGCAACTTCTGATTTTCCCTGTAATGGCATAGGCTTTGGTGAATCTTTCAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGTCCACCACCCTACGGTCGATCCTCGTTTGACGAGTCCCGTGGAAATGGTTTCCTTGGACGCTATGATGGTTATCAACTACGCGGTTCCAGAAACGGATGGCCAGCACAGATGCATGACAGTTCATCACATTTGCACGCGTCTGTTACAGCTGGACAGGGTTCATACATATCTGAAATGAAAAGTGGAATGTTCGCATCTTCCCTACTCGACAAGCCTATTCAGGAAAGCACAAATTCTCTCGGTATGCAGAACTTCCTTAATAACAATCAGTTCGATATTTCAAGGACTACGAAGGCGGTTGAGCGTAACCGAGCAACCCTACCAAAGTGTATTGCAGTATTGAACTAA 1896 0.4578 MGLIDLNTTEDDETETPYSAISSSSSSTHSGISTSASAMILPPSPPPPAQPSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACSIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVINADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKSSGSFAASGMQLDPGPLMDVVNALSKRSAFSVCYNPRVSSSDFIIPVNKFIKSLDCSYSAGMRFRMRFETEDAAERRITGLIAGISDVDPHRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSTSNLMAASLKRSRIGFTSSKLDFPVPNGIGVSDFGESLRFRKVLQGQEIMGINTPYDSINAQSPRLFELGRCYPGSNCSGIAAPGNIRMPQATSDFPCNGIGFGESFRFQKVLQGQEILPCPPPYGRSSFDESRGNGFLGRYDGYQLRGSRNGWPAQMHDSSSHLHASVTAGQGSYISEMKSGMFASSLLDKPIQESTNSLGMQNFLNNNQFDISRTTKAVERNRATLPKCIAVLN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10409 631 CDD B3_DNA 159 261 IPR003340 GO:0003677
Vifa1g10409 631 MobiDBLite consensus disorder prediction 13 39 - -
Vifa1g10409 631 Gene3D - 323 397 - -
Vifa1g10409 631 FunFam Auxin response factor 323 394 - -
Vifa1g10409 631 FunFam Auxin response factor 159 263 - -
Vifa1g10409 631 SUPERFAMILY DNA-binding pseudobarrel domain 154 268 IPR015300 -
Vifa1g10409 631 SMART B3_2 161 263 IPR003340 GO:0003677
Vifa1g10409 631 Pfam Auxin response factor 287 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g10409 631 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 562 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g10409 631 Pfam B3 DNA binding domain 161 262 IPR003340 GO:0003677
Vifa1g10409 631 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g10409 631 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Vifa1g10409 631 Gene3D - 159 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10409 Vifa-Chr1 1739514603 1739518318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10409 160 516 B3 DNA Binding Superfamily AT2G33860 60.221 3.51e-143 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g10409 B3 2.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10409 K14486 - gmx:100789906 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10409 1 1739514603 1739518318 Vifa1g10409 1 1739514603 1739518318 ECH