Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10406 ATGGATAGTATCAAGAAAAGGGATTCTCCTTTATCTTTGCATTATAGACTGTCAGGTAGTAAAGTTGTTGTATCTGGTGGTGCTTATGATAATAGAGAAGGAGAAGAGAATGAGAACAACTTTAGCCAAGTTACAAAGTTCATCGCAGAGGAAGTGGGAAGTGCTTGTGACACAAATAATTTGAATATCCTTCATCGAGATTTGAAGGAAAAGCTGACTGGAAAGAGGTTCTTGATTGTTTTGGATGTTTGGACCGAGGATGATGACTCTTGGAATTCTCTTTTGAAGCCTCTTCAATATGAAACTATAGGAAGTAAAATTCTTGTAACTACCCGTAGTGAAAAAGTTGCTTCTATGGTTCAAACTTTTCAACCTTACTCTCTTCACCAATTGTCTGATGAAGATTGTTGGTCAGTGTTTGCAAACAATGCTTGCCTTTCACCAGTTGAGAATATGGATCTCCAGAAAATTGGCAAAGAGATCGTTAGGAAATGTAAGGGATTGCCTTTAGCAGCACAGTCACTTGGGCGCTTGTTGCGAGAAAAAAGGGACATCAGGGATTGGACTAGTATACTTAATAATAATATCTGGGAGAATAAGAGTAAGATCATTCCAGCATTGAGAATTAGTTATCATTATCTCCCTCCATATTTAAAACGTTGCTTTGTATATTGTTCATTGTTTCCCAAGGATTATCAATTTGATAAACATGAATTAATCTTGTTGTGGATGGCGGAGGATCTTTTACATCCTTTAGAAAATAGCAAGACTTTAGAAGAAGTTGGTTTTGGGTATTTTAATGACTTAGCTTCTAAATCATTTTTTCAACATTCTGGTTGCGGGAACTTCAACCAACATTTTGTAATGCATGTTCTGGTGCATGATTTGGCAACATGGCTTGGTGGAGAATTCTATTTTAGAACAGAAGTACTTGGGAAAGATACTAAGATTGCTACCAAGACTCGTCATTTGTCATTTTCCAAGTTCAGTGATCCAATCTCAGCAAACTTTGATATTTTTGGCAGAATAAAATGTCTAAGAACAATCTCGCCAATCTATTTATGGGATGATCCATTCAACAAAGTAAAGGCTTCATGCTCCATTTTGTCAAAATTGAAGTACTTGAGAGTTTTAAAATTTGGCAACTTTGAAGGTCTTGATGCATTTCTTGATTCAATAGATGAACTAATCCATTTGCGTTATTTGGATCTCTCTTCCACGTCTATAAAGATTTTACCCGAGTCATTATGTAACTTGTATAATCTACAAACGTTAAAGTTGTTCAATTGTGAAAATCTAACAAGGCTTCCCAATGACATGCAAAATCTTGTAAATTTGCGCCATCTGGAAATTTGGGGAACTAATTTAAAAGAGATGCCTAAAGAAATGAGCAAATTGATTAATTTGCAACATTTGGGTTGGTTTGTCGTGGGAACGCAGGAAGAGAAAGGGATCAAGGAATTGGGAACACTTTCGAATCTTCACAGATCACTTGCCATTAGCAAATTAGAGAACGTGACCAACAGCTTTGAAGCATCACAGGCAAAGATAATGGATAAAAAGTACCTTGATAAAATATCGTTTGAATGA 1590 0.3604 MDSIKKRDSPLSLHYRLSGSKVVVSGGAYDNREGEENENNFSQVTKFIAEEVGSACDTNNLNILHRDLKEKLTGKRFLIVLDVWTEDDDSWNSLLKPLQYETIGSKILVTTRSEKVASMVQTFQPYSLHQLSDEDCWSVFANNACLSPVENMDLQKIGKEIVRKCKGLPLAAQSLGRLLREKRDIRDWTSILNNNIWENKSKIIPALRISYHYLPPYLKRCFVYCSLFPKDYQFDKHELILLWMAEDLLHPLENSKTLEEVGFGYFNDLASKSFFQHSGCGNFNQHFVMHVLVHDLATWLGGEFYFRTEVLGKDTKIATKTRHLSFSKFSDPISANFDIFGRIKCLRTISPIYLWDDPFNKVKASCSILSKLKYLRVLKFGNFEGLDAFLDSIDELIHLRYLDLSSTSIKILPESLCNLYNLQTLKLFNCENLTRLPNDMQNLVNLRHLEIWGTNLKEMPKEMSKLINLQHLGWFVVGTQEEKGIKELGTLSNLHRSLAISKLENVTNSFEASQAKIMDKKYLDKISFE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10406 529 Gene3D - 210 298 IPR036388 -
Vifa1g10406 529 Pfam NB-ARC domain 41 194 IPR002182 GO:0043531
Vifa1g10406 529 Gene3D - 30 124 IPR027417 -
Vifa1g10406 529 Gene3D Ribonuclease Inhibitor 334 529 IPR032675 -
Vifa1g10406 529 SUPERFAMILY L domain-like 289 502 - -
Vifa1g10406 529 Gene3D - 130 209 IPR042197 -
Vifa1g10406 529 PANTHER DISEASE RESISTANCE PROTEIN RP 38 527 IPR044974 GO:0006952
Vifa1g10406 529 PRINTS Disease resistance protein signature 165 179 - -
Vifa1g10406 529 PRINTS Disease resistance protein signature 71 85 - -
Vifa1g10406 529 PRINTS Disease resistance protein signature 417 433 - -
Vifa1g10406 529 FunFam Probable disease resistance protein At1g63360 211 299 - -
Vifa1g10406 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10406 Vifa-Chr1 1738276075 1738280269 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10406 392 472 WRKY Transcription Factor Family AT4G12020 39.024 6.03e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10406 - - cam:101497042 693.73