Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10398 ATGGAACATCAACATAAACTGTTTCCTCTTCTGGTGTTACTTCTGTTCCAAGTTTTGATTGTTGCATCACAGACAGATAGTGGAGATTTTACGGCTCTTTCGTCTCTCATACAGTCCTGGAAAAACAAACCGTTAAATTGGGTGGGTTCTGATCCTTGTGGAGGTGATTGGGATGGAATTCGTTGTGCCAATTCAAGAATTATCGAACTGAAACTACCTGGCTTGAATTTGGAGGGCCAGCTCTCTTCAGCAATTCAGTCTTTATCTGAACTCGATACACTCGATCTTTCGTACAGCGCGGGCATGACAGGAACGATTCCAAAAGAAATCGGGGATTTGAAAAACCTCAAATCCTTGGCATTGGTTAGCTGTGGTTTCTCTGGCCCTATTCCAGACTCAATAGGATCTTTAAAAAAGCTGACCTTTTTAGCGCTGAACTCGAATAAGTTAAACGGAAATATTCCGCGCACTCTTGGAAATCTAGCCGTCCTTGATTGGTTAGATCTTGATGATAACCAGCTGGAAGGGTCTATTCCTGTCTCTGATGGTCAAGGGCAGCCAGGTCTTGACATGCTCCTTATGGCCCAACACTTTCATTTGGGGAACAATAGACTCTCAGGTCCAATACCACCAACACTTTTTAACTCCAGCATGATTCTAGAGCATGTGCTTTTCGACCACAATCAACTAACAGGCAGTATTCCTAGCAGCCTTAGCTCTCTGACCAAAGTGGAAGTGGTGCGTTTTGACAAGAATCGATTAAGTGGGAGAGTGCCTAACAGTTTGAACAATCTCGAAACACTTAGCGAGATCTATTTATCTCACAATGAACTGAATGGTTCTCTGCCGGATTTTACTGGAATGACTCGTCTCACCTACGTGGATCTGAGTGACAATAATTTCAATTCTTCTGATATTCCTTCATGGGTTTATGCTTCTAGTATGCCAGATCTGACGTCAGTAATACTCAAGGACAACCGGCTCAGTGGCACATTAAATCTCAGCAGTGGCTACAGAAGAAGTCTGCAACTCATTGATTTGCAAAACAATGGTATTACCGAACTCGAGTTGGGAAACCAAAAGTTGAATTTCGACTTGAGACTAGCTCAAAACAAGATTTGTCTTGAAAATGGAGTTTCTAATGAGGTTTACTGCAAAGCTCCTCAAGTCATTCCCTCGTATTCAACACCAACAAATAATTGCCCAACTCCTTCATGCAGTAACAATCAAATTGCCAGCCCCAACTGTAAATGTGCATTTCCCTACATTGGAAATCTATCATCCAGAGCTTTTAGTTTCTCAAACTATAGTAACACGAGTTACTACACGGAAATTGAGCAGTCTTTGCTGGATACTTTTCGGAAACAAAACATTCCTGTGGATTCGGTTTCTCTTAGTAATCCTATCAAGGTTACATCTACTGATAACTTTCAGTTGACTCTTAATATGTTCCCTTCTCAAGCCGATCGTTTCAATGCCACTGGAGTTTCAACTGCTGCTTTTGTGCTTAGCAACCAAATTTACAAGCCTCCGGCATTTTTCTCCCCTTACGTCTTCAATGGTCTTAGCTATTCATATTATGGAGGAGAACCTAAGGGATCAAACTCATCAAATACAGGCGCAATAATTGGTGCCGTCGTTGGTATATTGGTCTTTCTTGTACTGGCGATCCTAATAGGGCTATACATTATTCGCAAAAAAAGAACAAGATCTTCCGAGTTGAACCCTTTTGTAAACTGGGAACAAAACAAGAATAGTGGAGCTGCTCCTCAGTTGAAAGGAGCGCGATGGTTTTCATTCGATGAGATGAGGAAATTTACCAACAATTTCGCAGAAGCCAACACTATTGGATCTGGTGGCTATGGACAGGTTTACCAAGGTGCTCTTCCCACTGGAGAATTGGTTGCAATCAAAAGGGCTGGAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTTGTAAGTCTTGTTGGCTTTTGTTACGAGAAAGGCGAACAAATGCTCGTCTATGAGTACGTTCCAAATGGCACTTTAATGGACAGTCTTACAGGAAAATCTGGGATATGGATGGATTGGATAAGGAGGCTCAAAGTTACATTGGGTGCTGCCAGGGGTCTGACCTATCTACATGAACTTGCAGACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAATCACCTCGTTGCTAAAGTGGCTGATTTCGGTCTCTCCAAGCTTCTTGTTGATAGTGATAGAGGCCATGTTACTACTCAAGTCAAAGGGACCATGGGATACTTGGATCCTGAATACTACATGACCCAGCAATTGACTGAAAAGAGTGACGTATATAGCTTCGGAGTACTAATGCTGGAACTAGCAACATCAAGAAAGCCAATAGAGCAAGGAAAATATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGACTTATACAACCTTCATTCGGTTCTCGATCAAACTATACTCAAAGGGACAAGGCCAAAAGGTTTAGAGAGGTATGTGGAACTTGCATTGAGGTGTGTCAAAGAATATGCAGCTGATAGACCTTCAATGGCCGAGGTTGCAAAAGAGATCGAGAGCATAATCGAGCTTGTTGGAGTGAACCCAAATTCTGAATCAACTACAACAACAGAAACTTATGAGGAAGCAGCAGGTGCAGGGAATGGTAAGCATCCTTATGTGAATGATGATGAATTTGAATATAGTGGAATGTTTCCTACAATAAGGGTAGATCCTCAATGA 2805 0.4164 MEHQHKLFPLLVLLLFQVLIVASQTDSGDFTALSSLIQSWKNKPLNWVGSDPCGGDWDGIRCANSRIIELKLPGLNLEGQLSSAIQSLSELDTLDLSYSAGMTGTIPKEIGDLKNLKSLALVSCGFSGPIPDSIGSLKKLTFLALNSNKLNGNIPRTLGNLAVLDWLDLDDNQLEGSIPVSDGQGQPGLDMLLMAQHFHLGNNRLSGPIPPTLFNSSMILEHVLFDHNQLTGSIPSSLSSLTKVEVVRFDKNRLSGRVPNSLNNLETLSEIYLSHNELNGSLPDFTGMTRLTYVDLSDNNFNSSDIPSWVYASSMPDLTSVILKDNRLSGTLNLSSGYRRSLQLIDLQNNGITELELGNQKLNFDLRLAQNKICLENGVSNEVYCKAPQVIPSYSTPTNNCPTPSCSNNQIASPNCKCAFPYIGNLSSRAFSFSNYSNTSYYTEIEQSLLDTFRKQNIPVDSVSLSNPIKVTSTDNFQLTLNMFPSQADRFNATGVSTAAFVLSNQIYKPPAFFSPYVFNGLSYSYYGGEPKGSNSSNTGAIIGAVVGILVFLVLAILIGLYIIRKKRTRSSELNPFVNWEQNKNSGAAPQLKGARWFSFDEMRKFTNNFAEANTIGSGGYGQVYQGALPTGELVAIKRAGKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCYEKGEQMLVYEYVPNGTLMDSLTGKSGIWMDWIRRLKVTLGAARGLTYLHELADPPIIHRDIKSSNILLDNHLVAKVADFGLSKLLVDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATSRKPIEQGKYIVREVMRVMDTSKDLYNLHSVLDQTILKGTRPKGLERYVELALRCVKEYAADRPSMAEVAKEIESIIELVGVNPNSESTTTTETYEEAAGAGNGKHPYVNDDEFEYSGMFPTIRVDPQ 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10398 934 Pfam Protein kinase domain 612 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10398 934 SUPERFAMILY Protein kinase-like (PK-like) 596 892 IPR011009 -
Vifa1g10398 934 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 686 896 - -
Vifa1g10398 934 MobiDBLite consensus disorder prediction 890 913 - -
Vifa1g10398 934 CDD STKc_IRAK 616 882 - -
Vifa1g10398 934 FunFam Leucine-rich repeat protein kinase family protein 185 284 - -
Vifa1g10398 934 FunFam Leucine-rich repeat protein kinase family protein 578 685 - -
Vifa1g10398 934 ProSitePatterns Protein kinases ATP-binding region signature. 616 642 IPR017441 GO:0005524
Vifa1g10398 934 SUPERFAMILY L domain-like 61 359 - -
Vifa1g10398 934 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Vifa1g10398 934 Gene3D - 529 570 - -
Vifa1g10398 934 PANTHER RECEPTOR-LIKE PROTEIN 55 38 882 - -
Vifa1g10398 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Vifa1g10398 934 Gene3D Ribonuclease Inhibitor 186 484 IPR032675 -
Vifa1g10398 934 ProSiteProfiles Protein kinase domain profile. 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10398 934 Gene3D Transferase(Phosphotransferase) domain 1 686 902 - -
Vifa1g10398 934 Gene3D Phosphorylase Kinase; domain 1 580 685 - -
Vifa1g10398 934 CDD TM_EGFR-like 535 568 - -
Vifa1g10398 934 SMART serkin_6 610 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10398 934 FunFam Leucine-rich repeat family protein 28 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10398 Vifa-Chr1 1736805247 1736809998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10398 10 934 Receptor kinase-like Gene Family AT5G49760 50.471 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vifa1g10398 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10398 - - mtr:11440804 1564.28