Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10396 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTTCTGCTTGTCACAGAACTCCTTACTCATCAGGTTGTGAAGAGAGAAGTCCTGAGCCGAAGCCTAGGTGGAATCCGAAACCTGAACAGATTCGGATACTTGAAGCTATATTCAACTCAGGAATGGTGAATCCACCGAGAGAAGAAATAAGGAAGATTAGAGCACAGTTACAAGAGTATGGTCAAGTTGGTGATGCTAATGTGTTTTACTGGTTCCAGAACCGCAAATCAAGAAGCAAACATAAGCTTCGTCATCTTCAAAACCAAAACAACTCAAGGAACCAGCAGAATCATAATCAGAATCAGAGTCAGGAACAACCACAGCATAACAATCATGCCTCTTCAGTTCCTCAAGCAACTGTTGCACCGTCGTCTTCATCTTCTTCGTCTGAGAAATCTCCGCCGAAGGAGTTAATCCCTTCCAAGGTGTTTTCTCTTGGCTTCCCTAACTTCAATGACGTTGTGCCTAATTCTCCATCCCCTTCTTCTGTGAGCCAAACCTATTTTCAGACACAAAATGAAGCTAATCTTCTTCCACCACCACAACCAAGAGTAACTGCACCACCTACTGAGACTTTCTTCTTCCCAGTGCAAAATCATGGACAAGGTGTTGTTGCTCAACCTAATAATGTTACTTCACAAGGGTTTTGCTTCTCTGAACTCTCAAATGTTGTTCATGCTCAACAACAACAGCATCAACAGCAGCAAAACACTGGTCATTGCACTACTAGTTTTCTTCTTAGTGAGATCATGAACAACCATGGTGCTAATTCCTCAAAGAAAGATCAAGATCAACAAGATCAGGATAAGTCTGTCAAAATAGTGCACCAAATCCCTCATTTCAACTTCTGTTTCACACCTACACCCACAACTACTACTACTGATGTACCTCCTACTACCTCCTCCACCATCACTGTTCCATCCCCTATCCTTTCTCAACTACAAGGCATCGGAGAAACAGGTGTTCCTGCAAGGTTAATGGTGTTCATCAATGATGTGGCGTTTGAGGTAGCATCTGGACCTTTCAATGTTCGTGAAGCATTTGGTGATGATTCTGTGCTCATTCATTCAACTGGACAACCAGTTTTAACAAACCAATGGGGTGTAACTCTCCATTCACTCCAGCATGGTGCATGTTATTATCTGATATAG 1251 0.4269 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNNSRNQQNHNQNQSQEQPQHNNHASSVPQATVAPSSSSSSSEKSPPKELIPSKVFSLGFPNFNDVVPNSPSPSSVSQTYFQTQNEANLLPPPQPRVTAPPTETFFFPVQNHGQGVVAQPNNVTSQGFCFSELSNVVHAQQQQHQQQQNTGHCTTSFLLSEIMNNHGANSSKKDQDQQDQDKSVKIVHQIPHFNFCFTPTPTTTTTDVPPTTSSTITVPSPILSQLQGIGETGVPARLMVFINDVAFEVASGPFNVREAFGDDSVLIHSTGQPVLTNQWGVTLHSLQHGACYYLI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10396 416 SMART HOX_1 52 119 IPR001356 GO:0003677
Vifa1g10396 416 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
Vifa1g10396 416 Gene3D - 54 120 - -
Vifa1g10396 416 MobiDBLite consensus disorder prediction 112 171 - -
Vifa1g10396 416 MobiDBLite consensus disorder prediction 40 61 - -
Vifa1g10396 416 CDD homeodomain 53 115 IPR001356 GO:0003677
Vifa1g10396 416 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 416 IPR044557 GO:0003700|GO:0050793
Vifa1g10396 416 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Vifa1g10396 416 MobiDBLite consensus disorder prediction 121 168 - -
Vifa1g10396 416 FunFam WUSCHEL-related homeobox 11 54 121 - -
Vifa1g10396 416 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10396 Vifa-Chr1 1736312737 1736314935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10396 224 416 Wox Gene Family AT5G45980 34.483 1.55e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa1g10396 Homeodomain 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10396 - - aprc:113852083 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10396 1 1736312737 1736314935 Vifa1g10396 1 1736312737 1736314935 ECH