Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10394 ATGGTTCTATCATCCCAATCCCAAACAGAACTACCTTTAAACGAAAACGATTCACAAGACATGGTAATATACCAAGTCCTAAACGAGGCTAATGCTCTAAGCAACACATTTCTCCCACAAAGAAACCACCATCATCAATCTCAGAGTGGCTTAGAACCAGCAAAAGCTATCACCAAGAAGCACTACAGAGGAGTTCGGCGTCGTCCGTGGGGGAAATACGCGGCCGAGATTCGCGACTCGGCTCGTCATGGAACAAGAGTCTGGCTTGGAACTTTTCAAACGGCTGAAGAAGCTGCCATGGCTTATGATAGAGCTGCTTTTGAAATGAGAGGGTCCAAGGCTTTGCTTAATTTCCCAGCTGAAATTGTTGCTGCAGCTTCCATGAAAATTGAACTTCCTATTTCAAAACTCAACTTGAATAATCATAATCATAATCATAATCATAATCATGATTCATCACAAAATTGA 468 0.4209 MVLSSQSQTELPLNENDSQDMVIYQVLNEANALSNTFLPQRNHHHQSQSGLEPAKAITKKHYRGVRRRPWGKYAAEIRDSARHGTRVWLGTFQTAEEAAMAYDRAAFEMRGSKALLNFPAEIVAAASMKIELPISKLNLNNHNHNHNHNHDSSQN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10394 155 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Vifa1g10394 155 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vifa1g10394 155 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Vifa1g10394 155 FunFam Ethylene-responsive transcription factor 2 60 121 - -
Vifa1g10394 155 PANTHER DNA-BINDING DOMAIN 25 140 IPR044808 GO:0003700|GO:0009873
Vifa1g10394 155 CDD AP2 60 120 IPR001471 GO:0003700|GO:0006355
Vifa1g10394 155 Gene3D AP2/ERF domain 60 121 IPR036955 GO:0003700|GO:0006355
Vifa1g10394 155 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Vifa1g10394 155 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vifa1g10394 155 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10394 Vifa-Chr1 1734910741 1734911208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10394 5 122 AP2-EREBP Transcription Factor Family AT4G17500 47.917 1.07e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g10394 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10394 K13433 - gmx:100811533 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10394 1 1734910741 1734911208 Vifa1g10394 1 1734910741 1734911208 ECH