Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10393 ATGTTTTTATATTACACCAACATGGAGAATATTCACATTCACAATAGTAATAATAATCATGCAACTGCAACTGAAGAAACTATTCTTGAGAATGTTTGGGCTAAAATTACAAGCAATGGTGATGGAAGAACAAATGGAAATGAAGGTGAATGTTCTAACACGTGGGAAGATTTGCCTAGTCTTGGTGAAAGAGGTAATGGATCAACTGAAATTCTTCAAAGACTACCAAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTGTTAAGCAACACAGAAGATTTTTCTAGCAACAAAAGCATGGAAAAAAATGAAAGTGTTACTAAATCAAAGGAAAAAGTAGAAGATGTTGTCGTGAGGAAAGAACAAAAAAGAGTTGAAAAACATTATAGAGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCTGAGATAAGAGATTCTTCAAAGAAAGGTGCAAGAGTTTGGCTTGGTACATTTGATAAAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTTCAAAAGCATGTCTTAACTTCCCAATAGAGAGAGTTACAAATTCAAATACAAATACAAATACAAATACTTTAGGATGTGGTCTGAAAGGAAATGATGATGTTAGAAACAGTGAAAGGTTGTTGGATTCTAGGAAGAGAGGATTAAGGGACAGGGAAGAGTTTGTTGATGTGATGAATATTGAAGAACCTGCAACAAAAAAGATGGTAGGGTTGGAAGAAATGTTGGAAAATGATGTTTTTGTATTTCAGGACCTGGGAGTTGATTACTTGGACAGTTTGTTGTCTTCATTTTGA 843 0.3523 MFLYYTNMENIHIHNSNNNHATATEETILENVWAKITSNGDGRTNGNEGECSNTWEDLPSLGERGNGSTEILQRLPSLGRWISMGADFWEEVLSNTEDFSSNKSMEKNESVTKSKEKVEDVVVRKEQKRVEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDKAEEAALAYDKAALRIRGSKACLNFPIERVTNSNTNTNTNTLGCGLKGNDDVRNSERLLDSRKRGLRDREEFVDVMNIEEPATKKMVGLEEMLENDVFVFQDLGVDYLDSLLSSF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10393 280 SUPERFAMILY DNA-binding domain 133 193 IPR016177 GO:0003677
Vifa1g10393 280 FunFam Ethylene-responsive transcription factor 2 132 193 - -
Vifa1g10393 280 ProSiteProfiles AP2/ERF domain profile. 133 191 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 Gene3D AP2/ERF domain 132 193 IPR036955 GO:0003700|GO:0006355
Vifa1g10393 280 PRINTS Ethylene responsive element binding protein signature 173 193 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 SMART rav1_2 133 197 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 CDD AP2 132 192 IPR001471 GO:0003700|GO:0006355
Vifa1g10393 280 PANTHER DNA-BINDING DOMAIN 103 226 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10393 Vifa-Chr1 1734827396 1734828238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10393 28 280 AP2-EREBP Transcription Factor Family AT4G18450 36.877 8.64e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g10393 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10393 - - mtr:11443318 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10393 1 1734827396 1734828238 Vifa1g10393 1 1734827396 1734828238 ECH