Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10385 ATGGCCGCATCTTTATTCAGAAACCGTTCCACATTGTCCGTACACAATTTGTTCAGCAATGCTCTTCGTCGTCTCTCTTCAGCACAGGTTTCAAACGCCATTCCCGATGAGGCACGTGAGAGAATGATGTACTCAGACATAAACTCACAGATTGGGAGTTGTATGCCTCTCTCTGCAATGCGAATTGGAACTATCATTCACAACATTGAGCTGAACCCTGGGCAAGGTGGAAAGCTTGTTCGAGCCGCCGGAACCAATGCAAAGATCTTGAAAGAGCCCACATCAGCATACTGTTTAGTCCAACTTCCATCCGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACTGTCTCTAATCCAACTCACGGAGATCGCAAGCTCACGAAGGCTGGCCATAGCAGATGGCTTGGTCGGAGGCCCGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCACCCTCATGGAGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTGCGTGGGGGAAAGGATCCCGCACTCCTTGGGGCAAGCCGACTAAGGGTGGCTTCAAGACTGGACCTCTTAAGCGCAAAAAGTAG 591 0.5025 MAASLFRNRSTLSVHNLFSNALRRLSSAQVSNAIPDEARERMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYCLVQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLTKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWGKPTKGGFKTGPLKRKK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10385 196 PANTHER RIBOSOMAL PROTEIN L2 44 193 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g10385 196 MobiDBLite consensus disorder prediction 150 196 - -
Vifa1g10385 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g10385 196 FunFam 50S ribosomal protein L2 122 196 - -
Vifa1g10385 196 FunFam 60S ribosomal protein L2, mitochondrial 45 121 - -
Vifa1g10385 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Vifa1g10385 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g10385 196 Gene3D - 45 121 IPR014722 -
Vifa1g10385 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa1g10385 196 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10385 Vifa-Chr1 1733089316 1733090051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10385 18 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.500 3.92e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10385 - - gmx:100792418 296.589