Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10378 ATGATGAAGAACAAAGAACAAACTCTCATCTTTCCTTTTCACACCCCCTTCTCCGAAGACCACGCCATCCCCCTCTCCCACCTCGACACCGATCGCAACCTCCACTCAACCTTCCGCTACCTTCGCGCTTACACCGCCACAACCACCGCCCACCACCACAACACCCCCCTCCACGTCATCTCCTCTTCCCTCTCACAAACACTCCCTCACTACTACCCACTCGCCGCCACACTCCGCCAACGCAAACACACCGACAACCGCCTCGAACTCTTCTGCACCACCAACCAAGGCATCCCTCTTATCCACACCACCGTAGACTTCACTCTCGACTCCGTAAACTACCTCGATGACCCTGCTTCGCCTTTCGTCGAACAGTTGGTACCCGACCCAGAACACGAAGAGGGAATGAAGCATCCATGTATGCTTCAGCTAACGGTTTTCAAGTGCGGCGGCTTCACTCTCGGTGCAGCGATCCATCACTCGCTGTGCGACGGAATGGGCGGGACTCTGTTTTTTAACTCGGTGGCTGAGTTGGCTCGCGGGGCGACTCGGATATCGGTTGAGCCTGTATGGGAACGAGAGAAGTTGTTGGGTCCAAGGGATCCTCCCCGAGTGGATTCGCCGTTGATAAGACAGCTTCTGAGTTTGGACAAAGAATTTTCGCCGTATAAAGAGAATATTAATAGTGTTGTGAGAGAGTGTTTTCATGTGAGGGATGTGTGCTTGGACAATTTCAAAACATCATTGTTTGATCAATGTGGAATCAAATTCACCACTTTTGAAGCTCTAGGTGCCTACATTTGGAGATCCAAGGTAAGGGCCTCGCGAGTGGAGGACAATGAGAAGGTTAAATTTGCATATTCAATTAATATCAGGAGATTAGTAAAGCCATCACTACCTAATGGCTATTGGGGTAATGGTTGTGTTCCAATGTATGTTCAATTGAGTGCCAAAGATTTGATAGATCAACCCATTTGGAAAACAGCAGAACTAATAAGAAAGAGTAAAAGCAATGTTACTGATGAGTATGTTCGTTCCTTCATCGATTATCAAGAGCTGCATTTCGGTGATGGAATTACGGCAGGGAAATGGGTGAGTGGGTTCACTGATTGGAGACACTTGGGTCATTCTACTGTGGATTTTGGGTGGGGTGGCCCTGTTACTGTTTTGCCACTTGGAAGAAACTTGCTTGGGAGTGTTGAACCTTGCTTCTTTTTACCTTATTCGACGGCTAGTGCGGAGAAAAAGGATGGGTTTAAGATTTTGGTGACTTTGAATGAGGCAGCATTGCCTGCTTTTAGAGAAGACATGCAAATGTTTGCCGCTAGCCAAGAGGCGGCACTCTTGCCGCGCATTTGA 1359 0.4842 MMKNKEQTLIFPFHTPFSEDHAIPLSHLDTDRNLHSTFRYLRAYTATTTAHHHNTPLHVISSSLSQTLPHYYPLAATLRQRKHTDNRLELFCTTNQGIPLIHTTVDFTLDSVNYLDDPASPFVEQLVPDPEHEEGMKHPCMLQLTVFKCGGFTLGAAIHHSLCDGMGGTLFFNSVAELARGATRISVEPVWEREKLLGPRDPPRVDSPLIRQLLSLDKEFSPYKENINSVVRECFHVRDVCLDNFKTSLFDQCGIKFTTFEALGAYIWRSKVRASRVEDNEKVKFAYSINIRRLVKPSLPNGYWGNGCVPMYVQLSAKDLIDQPIWKTAELIRKSKSNVTDEYVRSFIDYQELHFGDGITAGKWVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCFFLPYSTASAEKKDGFKILVTLNEAALPAFREDMQMFAASQEAALLPRI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10378 452 Gene3D - 220 437 IPR023213 -
Vifa1g10378 452 Pfam Transferase family 5 438 - -
Vifa1g10378 452 PANTHER ACYL TRANSFERASE 4 3 440 - -
Vifa1g10378 452 Gene3D - 2 210 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10378 Vifa-Chr1 1732022013 1732023647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10378 58 393 Monolignol Biosynthesis Gene Families AT5G48930 28.286 3.93e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10378 - - gmx:100817021 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10378 1 1732022013 1732023647 Vifa1g10378 1 1732022013 1732023647 ECH