Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10367 ATGACACTTTTCTCAACTAACCTCAAAGTTCTTGCCATTCATCATGACACCATTCTTCTTGATCAAATTCAGCAAATGTGTGACCGCTGTCATTATCTACTAACCAAATGCACTTCACCTTTTTATGCTCTTCATCTTCTTGCGCAAAGAAATCATTATTTTGATATCATGTTGATTGATGTTCAAATGCCAAGCATGGATTCATTTGAGTTTCTTAGATATGTAACCCTACAACACAACATCCCTGTCATTGTCATTTCTTCTGATGACACAATCAGTTCGGTAATAAAGTCTATACTTCACGGGGCTTGTGATTACTGGGTTCAACCTTTACATGAAAAACATTTCAAGACCATGTGGCAGCACGTTGCCAGAAAAACATTGTTTGAAAATAAAGAACCTGGAGTTCTTGGATTCTTGGATGCACAAAGTCATAAAGAACCTGAAGTTGTTGGATTGTTGAAAGCACAAAGCCCTAAAGAATCTGAAGTTGTTGATATCTTGGAGGCTCCTCAGCATGCAAGAAAATGGGAGAGAGAAGATGGTAATCCTCCAAAAGAAAAAAGTGCAAAAAAGAGTCGGTTATCATGGACACCACAATTGCATCAACAGTTTGTAAATGCTGTTAACCAACTTGGCATTGATGAGGCAAAACCAAGAAAGATTGTCAAAATAATGGATGTTTGTGGTTTAACAACCACTCAGGTTGCAAGTCATTTGCAGAAGTATAGAGACTATTTCAAGAGAACACCTTGTGGAAAAAAGTCAAAGAGAAGTCCAAGAATTGACACTCCAACTGAGTGTATTAATATAACACCATCAGAAACTGAACATTCTAACTCAATCTTACATCAGGACCAAAGTTCTCAACTGAAGTCAACTACCCTTTAA 891 0.3726 MTLFSTNLKVLAIHHDTILLDQIQQMCDRCHYLLTKCTSPFYALHLLAQRNHYFDIMLIDVQMPSMDSFEFLRYVTLQHNIPVIVISSDDTISSVIKSILHGACDYWVQPLHEKHFKTMWQHVARKTLFENKEPGVLGFLDAQSHKEPEVVGLLKAQSPKESEVVDILEAPQHARKWEREDGNPPKEKSAKKSRLSWTPQLHQQFVNAVNQLGIDEAKPRKIVKIMDVCGLTTTQVASHLQKYRDYFKRTPCGKKSKRSPRIDTPTECINITPSETEHSNSILHQDQSSQLKSTTL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10367 296 Pfam Response regulator receiver domain 10 118 IPR001789 GO:0000160
Vifa1g10367 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Vifa1g10367 296 Pfam Myb-like DNA-binding domain 195 244 IPR001005 -
Vifa1g10367 296 FunFam Two-component response regulator 188 250 - -
Vifa1g10367 296 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vifa1g10367 296 SUPERFAMILY Homeodomain-like 190 249 IPR009057 -
Vifa1g10367 296 Gene3D - 189 250 - -
Vifa1g10367 296 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 267 IPR045279 GO:0009736
Vifa1g10367 296 SMART REC_2 8 120 IPR001789 GO:0000160
Vifa1g10367 296 MobiDBLite consensus disorder prediction 172 195 - -
Vifa1g10367 296 Gene3D - 3 132 - -
Vifa1g10367 296 MobiDBLite consensus disorder prediction 251 296 - -
Vifa1g10367 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 248 IPR017930 -
Vifa1g10367 296 CDD REC_typeB_ARR-like 10 124 - -
Vifa1g10367 296 MobiDBLite consensus disorder prediction 172 193 - -
Vifa1g10367 296 MobiDBLite consensus disorder prediction 263 296 - -
Vifa1g10367 296 SUPERFAMILY CheY-like 7 132 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10367 Vifa-Chr1 1730777502 1730778577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10367 43 249 Response Regulator Gene Family AT3G16857 40.359 1.32e-44 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa1g10367 Response_reg 6.3e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10367 - K14491 psat:127104423 382.104