Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10363 ATGATGCTAAATCCAAGGTATGCCATTCCCAAATTCTCTCCTAATCCTATTCTAACTTCTTCTACATTGTTTCTTTATCGCTTCTTCAGTCATTTGCAATGCCACTATGGTAGAAAAAGTTCTGGGTTTCATAATGTAGATGCTGTTGTTACTCGTTTCAATTGCTTGATTCGCGCACTTTCTCCGCCACCCACTTGTGAATTTGACAAGGTTTTAGGAGCTATTGTGAGGATGGGTCATTATCCCACTGCAATTTCTCTTTTTTCGCAGTTTCAACTTAGGGGAATTTCACCTTCCATTGCTACTTTCAGCATCTTGATTAACTGTTTTTGTCATCAATCTCATATGGGTTTTGCTTTTTCGTTATTGGGTACCATTCTTAAGAGTGGCTATGAACCTAACATGGTGACTTTTAATACAATTATTAATGGTTTTTGTATGAATGGGATGATTTTTAAAGCTTTGAACTTTTACCAAGACCTAGTAGCCCAAGGGTATCTTTTTGATGAGTTTACTTATGGGATTTTAATCAATGGGTTGTGTAAAAATGGGCAAACTAGAGCTGCGTTGCATTTGATACAAGAGATGGAGGAACGGTCGGTTGAACCGAATCTAGTAATGTATAGTGCAGTCATTGATGGACTATGCAAAGATGGACTTGTCACGGATGCGCTTAGTTTGTGTTCTCAGATGGCTGATAAGGGAGTTTTACTTGATGTTGTCACGTACAACTCTTTAATTCGTGGTTGTTGCAGTCTGGATCCCTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCCGGTGCCGGGACAAAAGGATATGTTCATGTCCGTGTACAACAGCGTAACAGAAGGAAAAGCTTAACAATTGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGTTGTAATGGTACTGTTGTCGAGGACCCTGAGTTGGGCCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTACTTTCCTTGTGCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTACTTTCCTTGTGCAGGCTGGCATTGTAAAGAAGGAGAATATCAAGCTTCATGGTTTTTAA 1125 0.3973 MMLNPRYAIPKFSPNPILTSSTLFLYRFFSHLQCHYGRKSSGFHNVDAVVTRFNCLIRALSPPPTCEFDKVLGAIVRMGHYPTAISLFSQFQLRGISPSIATFSILINCFCHQSHMGFAFSLLGTILKSGYEPNMVTFNTIINGFCMNGMIFKALNFYQDLVAQGYLFDEFTYGILINGLCKNGQTRAALHLIQEMEERSVEPNLVMYSAVIDGLCKDGLVTDALSLCSQMADKGVLLDVVTYNSLIRGCCSLDPFAEANAEDSGAGAGTKGYVHVRVQQRNRRKSLTIVQGLKKEFSYSKILKDLKKEFCCNGTVVEDPELGQVIQLQGDQRKNVSTFLVQVIQLQGDQRKNVSTFLVQAGIVKKENIKLHGF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10363 374 SUPERFAMILY eIF1-like 343 374 IPR036877 GO:0003743|GO:0006413
Vifa1g10363 374 NCBIfam translation initiation factor SUI1 251 342 IPR005874 GO:0003743
Vifa1g10363 374 Gene3D - 343 374 - -
Vifa1g10363 374 Gene3D Tetratricopeptide repeat domain 197 260 IPR011990 GO:0005515
Vifa1g10363 374 Gene3D Tetratricopeptide repeat domain 127 196 IPR011990 GO:0005515
Vifa1g10363 374 Gene3D Tetratricopeptide repeat domain 36 126 IPR011990 GO:0005515
Vifa1g10363 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Vifa1g10363 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vifa1g10363 374 Pfam PPR repeat family 203 252 IPR002885 -
Vifa1g10363 374 Pfam PPR repeat family 61 112 IPR002885 -
Vifa1g10363 374 Pfam PPR repeat family 133 182 IPR002885 -
Vifa1g10363 374 FunFam Eukaryotic translation initiation factor SUI1 244 343 - -
Vifa1g10363 374 SUPERFAMILY eIF1-like 253 342 IPR036877 GO:0003743|GO:0006413
Vifa1g10363 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Vifa1g10363 374 NCBIfam pentatricopeptide repeat 102 134 IPR002885 -
Vifa1g10363 374 NCBIfam pentatricopeptide repeat 206 239 IPR002885 -
Vifa1g10363 374 NCBIfam pentatricopeptide repeat 136 169 IPR002885 -
Vifa1g10363 374 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Vifa1g10363 374 ProSiteProfiles Translation initiation factor SUI1 family profile. 274 344 IPR001950 GO:0003743|GO:0006413
Vifa1g10363 374 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 45 259 - -
Vifa1g10363 374 CDD eIF1_SUI1 272 373 IPR005874 GO:0003743
Vifa1g10363 374 Gene3D - 261 342 - -
Vifa1g10363 374 Pfam Translation initiation factor SUI1 271 342 IPR001950 GO:0003743|GO:0006413
Vifa1g10363 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10363 Vifa-Chr1 1729648896 1729651002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10363 252 374 Eukaryotic Initiation Factors Gene Family AT1G54290 73.171 7.13e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10363 - - psat:127105702 475.322