Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10334 ATGTCAACTCCTCCATCATCATCTTCTTCAATTTGGATTCTATCTAACATGAAGCTTCAATTCTTTACACGTATCAAACGTTTTCTCCAATCCAAAGCAACCCGAAAACGCTGCGATATCTCTGATCAGTCTAACAAAGAAAAAACCATAACTAAGCAGAACAAAGCTGAAAAGATTGAAGCAGTTCAAGTTGTGGAGAACCATAAGGAGGAGGTGGAGGTGGAGGAAACTGAAATTCTGCTGCAAAAGACTGTGAAAATGCTTCACTTTGGAAGCTGGGAAGAGAAAGAGGTAGCTGCAAAAGAGATTGAATGTTTAGTTAAAGATGATGTCAAAGTTAGAAAGTTGATAACAGAACTTGGGGTGGTGCCGGTTTTGGTATCCATGGTGGCGTCGCCGGTGGTTAGTCGCCGGAGAGCAGGGTTGACGGCGTTGATCTACCTAGCTGATGGAACTTACACGAACAAAGCTATGATAGTGGAGGCAGGAATATTATCCAAACTACCTAAGACAATTGACCTTATAGATAACTCAACCATGAATGAGTTTGCAGAGTTAGTTCTATCATTATCATCACTTGCAAACACACAATTTCCTTTTCCTTCATTAAATTTTCTACCATTTCTCAAAGACATTCTTAAAATAGACACAAACTTTGACACCAAAAGATCATGTTTAGGTGCCTTGTACAACATATCAACAATGTTAGAAAATGCAAGCACTTTGGTTTCTTATGGTATTGTCCCAATTTTGTTGGAACTTTCTTTAGTGAAAGAAATTTCGGAAAAAGCACTTGCTACTTTGGGTAATTTGTTGGTTACTCTAACGGGAAAAAAGGAAATAGAGAAAAGCTCAATGGTGCCACAAAATTTTGTGGAGGTTTTGTCATGGGAAGACAAACCAAAATGTCAAGAGTTGTCGGTTTATATTTTGATGATTTTGGCTCATCAAAATTTTGATCAAAGAGAGAAAATGGCACAAGCTAGGATTGTTCCTATGCTTCTTGAAGTTGTTTTGTTGGGGAGTCCTTTAGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGAATGAGAGGCAGGTTAAGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGATCACCTTTGAACCAAAGGGATAGTAAAGAAGGGAAGAATTTGATGAAGAGTTTGGTGAAACAAAGTTTGCATAAGAATTTGGAAATAATAACTCAAAGGGCGAATTTAAATGGAGAGTCCTCGAAACATAAGTCGTTCGTTGTCAGCACAAGTTCCAAGAGTTTGCCTTATTGA 1308 0.3838 MSTPPSSSSSIWILSNMKLQFFTRIKRFLQSKATRKRCDISDQSNKEKTITKQNKAEKIEAVQVVENHKEEVEVEETEILLQKTVKMLHFGSWEEKEVAAKEIECLVKDDVKVRKLITELGVVPVLVSMVASPVVSRRRAGLTALIYLADGTYTNKAMIVEAGILSKLPKTIDLIDNSTMNEFAELVLSLSSLANTQFPFPSLNFLPFLKDILKIDTNFDTKRSCLGALYNISTMLENASTLVSYGIVPILLELSLVKEISEKALATLGNLLVTLTGKKEIEKSSMVPQNFVEVLSWEDKPKCQELSVYILMILAHQNFDQREKMAQARIVPMLLEVVLLGSPLAQKRAMKLLQWFKNERQVKMGPHSGPQTPRFAMGSPLNQRDSKEGKNLMKSLVKQSLHKNLEIITQRANLNGESSKHKSFVVSTSSKSLPY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10334 435 Gene3D - 48 410 IPR011989 -
Vifa1g10334 435 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 435 - -
Vifa1g10334 435 SMART arm_5 152 234 IPR000225 GO:0005515
Vifa1g10334 435 SMART arm_5 235 273 IPR000225 GO:0005515
Vifa1g10334 435 SMART arm_5 110 150 IPR000225 GO:0005515
Vifa1g10334 435 MobiDBLite consensus disorder prediction 363 387 - -
Vifa1g10334 435 SUPERFAMILY ARM repeat 83 356 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10334 Vifa-Chr1 1724687915 1724690585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10334 40 382 U-box Gene Family AT1G67530 26.404 2.33e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10334 - - gmx:100813828 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10334 1 1724687915 1724690585 Vifa1g10334 1 1724687915 1724690585 ECH