Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10308 ATGGCATCCTCCAAAGAAACCTTCGTCTACACCGCCAAGCTCGCCGAACAAGCCGAACGCTACGAAGAAATGGTTGAAGCGATGAAGAATGTCGCTAAGCTTGACGTTGAATTGACGGTGGAAGAGCGGAATCTTCTGTCTGTTGCGTATAAGAATGTTGTGGGAGGACGTAGGGCCTCGTGGAGGATTCTTTCCTCGATTGAGCAAAGGGAGGAGACGAAAGGGAATGAGGTGAATGTGAATCGGATTAAGGAGTATAGGAAGAAGGTTGAATCGGAGTTGTCTGATATCTGTACTGATATCATGGCTGTGATTGATGAACATCTTATTCCGAATTCGTCTGGTGAATCGAATGTGTTTTACTACAAAATGAAAGGTGACTATTATCGTTATTTGGCTGAGTTTAAGAGTGGGGATGACAGGAAAGAGGCTGCTGATCAGTCCTTGAAAGCATATCAGGAAGCTTCCACTGCTGCAGAGACCGAGTTGCCTCCCACTCATCCTGTCAGATTGGGTTTGGCTTTGAACTTCTCTGTCTTCTATTATGAAATCTTGAACTCTCCTGAAAGGGCCTGTCACCTTGCCAAGCAGGCATTTGATGTAGCAATTGCTGAGTTGGATTCTCTCAATGAGGAATCTTACAAAGACAGCACACTGATCATGCAGCTTCTGAGGGACAACCTGACATTGTGGACTTCTGATATTCCTGAGGAAGGAGTCGAGGAACAAAAGGCGGAGTCTGCCAGAGCTCCTGTAGGAGATAATGCAGAGTAA 774 0.4587 MASSKETFVYTAKLAEQAERYEEMVEAMKNVAKLDVELTVEERNLLSVAYKNVVGGRRASWRILSSIEQREETKGNEVNVNRIKEYRKKVESELSDICTDIMAVIDEHLIPNSSGESNVFYYKMKGDYYRYLAEFKSGDDRKEAADQSLKAYQEASTAAETELPPTHPVRLGLALNFSVFYYEILNSPERACHLAKQAFDVAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDIPEEGVEEQKAESARAPVGDNAE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 151 177 IPR000308 -
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 178 204 IPR000308 -
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 205 234 IPR000308 -
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Vifa1g10308 257 PRINTS 14-3-3 protein zeta signature 116 138 IPR000308 -
Vifa1g10308 257 SMART 1433_4 5 245 IPR023410 -
Vifa1g10308 257 Pfam 14-3-3 protein 12 232 IPR023410 -
Vifa1g10308 257 ProSitePatterns 14-3-3 proteins signature 2. 214 233 IPR023409 -
Vifa1g10308 257 Coils Coil 11 31 - -
Vifa1g10308 257 MobiDBLite consensus disorder prediction 238 257 - -
Vifa1g10308 257 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Vifa1g10308 257 Gene3D - 1 245 IPR036815 -
Vifa1g10308 257 PANTHER 14-3-3 PROTEIN 6 235 IPR000308 -
Vifa1g10308 257 FunFam 14-3-3 protein epsilon 1 245 - -
Vifa1g10308 257 SUPERFAMILY 14-3-3 protein 4 234 IPR036815 -
Vifa1g10308 257 PIRSF 14-3-3 1 246 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10308 Vifa-Chr1 1719641677 1719645266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10308 1 257 14-3-3 family AT2G42590 76.806 1.90e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10308 K06630 - gmx:100807980 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10308 1 1719641677 1719645266 Vifa1g10308 1 1719641677 1719645266 ECH