Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10303 ATGCCGGACTTTCACGATTCCCTCACTCCGCCGTCACGTCCTGTCCCTGTCCGTGAAGATTGCTGGTCTGAGGAAGCTTCATCCACTCTGGTTGATGCTTGGGGCCGTCGTTACCTTGAACTCAACCGCGGGAATCTCCGGCAGAAGGATTGGCAGGATGTTGCTGATGCTGTTAATGCCCTTCATGGACATACCAAGAAAACTCATCGTACAGATGTTCAGTATGCTTTGGTTGGACCTAATTTTAATACCAAAAGAACTTCTTCATCGCCATCGCCGTCGCCGCCGGTTGCTCTTCCTTTGATTCCTTTTCGGAAATTCGCTCCTTCGTCACCTGCTATTTCTGTGCCTCCGACTGCCGTTGCGCTTCCGCAGAAGAGACCGATTGCCGCGGTGATGGATGATGGTTATTTCAGGAGGAATTATTCCGCGGTGGCCGCCGCAGCGGCTGCCGCCGAAGCTGATGAGGATGAGGAGGAAGATGAAGAAGAGGAAGTAGAAGTAGAGGAGGAAGAGGTGGAGGTAGAGGAAGAGGAAGGGAGGGGAAGCGAAGTGGATGAAGGGGAGAAAGGGAGGGAAGGGATGAAGAGGTTGGCGAAGGCTATTGAGAGATTCGGTGAAATGTATGAGAGAGTGGAGGGGCAGAAACTTAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAGGATATTGAAGTGCAGAGGATGCAGATGTTTATGGATACACAAGTTCAGCTGGAGAGAATCAAGCGTGGAAAACGATCAGGGTCTAATGATATATATAATAGCTAG 801 0.5031 MPDFHDSLTPPSRPVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQYALVGPNFNTKRTSSSPSPSPPVALPLIPFRKFAPSSPAISVPPTAVALPQKRPIAAVMDDGYFRRNYSAVAAAAAAAEADEDEEEDEEEEVEVEEEEVEVEEEEGRGSEVDEGEKGREGMKRLAKAIERFGEMYERVEGQKLRQMVDLEKQRMQFAKDIEVQRMQMFMDTQVQLERIKRGKRSGSNDIYNS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10303 266 MobiDBLite consensus disorder prediction 150 194 - -
Vifa1g10303 266 Coils Coil 145 181 - -
Vifa1g10303 266 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g10303 266 MobiDBLite consensus disorder prediction 152 183 - -
Vifa1g10303 266 Pfam Myb/SANT-like DNA-binding domain 19 74 IPR044822 -
Vifa1g10303 266 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 74 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10303 Vifa-Chr1 1717398253 1717402958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10303 18 74 Trihelix Transcription Factor Family AT3G14180 56.140 1.17e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g10303 Myb_DNA-bind_4 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10303 - - gmx:100815241 361.688