Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10298 ATGTCTCCTCTTGGATTTCTTCTTCTTGGTGTTTTCTACATGGTTTCTCATGTAAATGGCCATGGTGGTCATGCTAGTTGGATTAATGCTCATGCTACTTTCTATGGTGGAAGTGATGCTTCCGGAACAATGGGTGGAGCCTGTGGATATGGAAATTTATATAGCCAAGGTTATGGAACAAATACAGCAGCATTAAGCACAGCATTATTCAACAATGGATTGAGTTGTGGAGCATGTTATGAAATAAAATGTGTGAATGATCCACAATGGTGTACTCCTGGATCCATTATAGTTACTGCCACTAATTTCTGTCCACCTGGTGGGATTGTACCTGTTGCTTACAGAAGGGTAAGGTGCAGAAGAAGAGGTGGAATAAGATTCACTATCAATGGACATTCTTACTTCAATTTAGTACTAGTGACAAATGTTGGAGGAGCTGGTGATGTACATTCTGTGGCCATAAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGGGCAAAATTGGCAAATGTGGTTTCATTCAATGCTGCACCAGCTGGTTGGTCTTTTGGTCAAACCTATACCGGAAGACAATTCAACTATTAA 597 0.4087 MSPLGFLLLGVFYMVSHVNGHGGHASWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCTPGSIIVTATNFCPPGGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGAKLANVVSFNAAPAGWSFGQTYTGRQFNY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10298 198 Gene3D - 120 174 IPR036749 -
Vifa1g10298 198 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 134 170 IPR007117 -
Vifa1g10298 198 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Vifa1g10298 198 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Vifa1g10298 198 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vifa1g10298 198 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vifa1g10298 198 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vifa1g10298 198 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vifa1g10298 198 Pfam Expansin C-terminal domain 125 170 IPR007117 -
Vifa1g10298 198 Pfam Lytic transglycolase 62 110 IPR009009 -
Vifa1g10298 198 CDD DPBB_EXPA_N 27 107 - -
Vifa1g10298 198 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 124 IPR007112 -
Vifa1g10298 198 Gene3D - 15 119 IPR036908 -
Vifa1g10298 198 SMART dpbb_1 62 114 IPR007112 -
Vifa1g10298 198 SUPERFAMILY PHL pollen allergen 121 193 IPR036749 -
Vifa1g10298 198 PANTHER EXPANSIN-A15 11 106 IPR002963 GO:0009664
Vifa1g10298 198 SUPERFAMILY Barwin-like endoglucanases 26 142 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10298 Vifa-Chr1 1715246140 1715247739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10298 1 196 Expansin Gene Family AT2G03090 61.600 1.32e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10298 - K20628 gmx:100790170 317.39