Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10291 ATGGGAATGAGATGTAACACATTTGGATTTTGGTTTTGGATTTGTATTTGCTTTATTTCTGTTTGGGGAATTAGTGAGTGTTTGTCGCTTAATGATGAAGGATTGGCTTTGTTGGAGGTTCGTCGAAGAATAACTTGTGATCCTCGTCTTGCTTTGGAAAATTGGAATCCAAATGATTGTGACCCTTGCAACTGGTTCGGGGTTCATTGCGTCAACGGTAAAGTGCAGACTTTGGACCTAAATGGTCTGTCCTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACTTAAAATCACTTGTGTTAAGCAATAATAACTTTTCTGGTGACATTCCTAAAGAGCTTGGAGATTTAGCTGAGTTAGAGTTATTAGATTTAAGGGAGAATAATTTATCAGGATGCATCCCACCAGAACTTAGTAAAATGTTATCCCTAAAGCACTTATTGCTTTGTGATAACAACATAGAAGAAAGTGATTCCCAAGACCAAGGAAATTTCAGATTATTTTCTAAATCTCTACTTGATGAATGTTCATCGCCTCTCGCGACATTATTTGCCTGCATTAATAGAAAGTTTGGTCACTGTGTGTGGCATAGCAACGTCAAGCAATGGAACAAACCAGATTCGTTGATTATTCCGATTAAAGTAGCACTTCTGAAATGCCTCGATGTCTTTTCGCTGCCTCTGTTCAAGCAAGTCCATGAAGAGAAATATTTCGACCTTCAGCGTCGTGTTAACGAACCAGAAATCGCGATGCATGTGCCAAACCTTATCAATTATGGGCGTCGTAGGTTACTTGAACATTCGAGTAACCTTGCAGCCGCACCTTATAAAGGTGAACCTCCAAAAGATTTCAGTAAAACTCCAATTAGCATTAGTAGTGGATCTTCTCCAGCTTTTCCACAAGCAAAAAAGAAGCAAAATCAGTCACATACACCATTACCTCCTTCTGATTCTCTTCCAAATGATGGAAACCAAACAAGTCAACATCGACTGGGAATACATGAAAGCGTGTGGAAGTATATACTTATCGTCATAGGCATTGTTGTGATTGTCGTTTTGATCATAGTTCTTCTTTGCCTTTGGACAAAACCAGCAGTTAAAATAATTAAACCTTGGAACACAGGCATAAGTGGACAGTTGCAAAAAGCTTTTATAACAGGCGTTCCTAAGTTGAATAGGGTAGAATTAGAGACAGCTTGTGAAGATTTCAGCAATATTGTTATTAGTTTTGAAGCATGCACTATATTCAAAGGAACATTGTCTAGTGGAGTTGAAATTGCTGTTGTCTCTAGTCTATTTACTTCTCCAAAACAATGGACTAAGAACATGGAATTGATCTATAGAAGAAAGATTGCGACATTGTCCCGCATTAACCATAAGAACTTTGTTAATCTTATTGGATATTGTGAGGAAGAAGAACCATTCTCGAGGATGTTTGTATTTGAATATGCCCCAAATGGAAGCCTATTTGAGTACCTACATGTTAAAGACGTTGAACGTCTTGAATGGAGTGAAAGAATAAGAATAATAATGGGAACTGCGTATTGTCTTACATACATGCACGGTTTAAGTCCACCAATATCTCATACCAAAGTTGCTTCAAGTTTGATCATGTTGACAGATGATTATGCTGCAAAGCTCGCAGAGATCACTTTTAGAAGTATTGTAGAACCTCCTAGGACAACTAGAGGTGACTCTTCAAACAAATCTGAGATGCAACGCGCGGCTTTTGACACCAATGTCTATGATTTCGGAATATTGTTGCTAGAAATCATTTCCGGGAAATTGCCTCATTCTGAAGAACAAGGAAGTCTTGTCAACTGGGCTTCTGAGTACTTAAATGACAGAAGAAGTATAAGTTATATGATTGATCCGAGTCTGAAATCATTCAAAGACAATGAACTGGACGTGATCTGTGAGGTGATTCAAGGGTGTATCCAACCCGAACCGAAGTTAAGGCCAACAATGAAAGACATAACTTCCAAATTAAGAGAAGTGGTTAATGTAACACCTGATCAAGCTTCTCCAAGGCTTTCTCCATTATGGTGGGCTGAACTTGAGATATTATCAGTGGAGGCTACTTGA 2094 0.3873 MGMRCNTFGFWFWICICFISVWGISECLSLNDEGLALLEVRRRITCDPRLALENWNPNDCDPCNWFGVHCVNGKVQTLDLNGLSLEGTLAPELGKLSHLKSLVLSNNNFSGDIPKELGDLAELELLDLRENNLSGCIPPELSKMLSLKHLLLCDNNIEESDSQDQGNFRLFSKSLLDECSSPLATLFACINRKFGHCVWHSNVKQWNKPDSLIIPIKVALLKCLDVFSLPLFKQVHEEKYFDLQRRVNEPEIAMHVPNLINYGRRRLLEHSSNLAAAPYKGEPPKDFSKTPISISSGSSPAFPQAKKKQNQSHTPLPPSDSLPNDGNQTSQHRLGIHESVWKYILIVIGIVVIVVLIIVLLCLWTKPAVKIIKPWNTGISGQLQKAFITGVPKLNRVELETACEDFSNIVISFEACTIFKGTLSSGVEIAVVSSLFTSPKQWTKNMELIYRRKIATLSRINHKNFVNLIGYCEEEEPFSRMFVFEYAPNGSLFEYLHVKDVERLEWSERIRIIMGTAYCLTYMHGLSPPISHTKVASSLIMLTDDYAAKLAEITFRSIVEPPRTTRGDSSNKSEMQRAAFDTNVYDFGILLLEIISGKLPHSEEQGSLVNWASEYLNDRRSISYMIDPSLKSFKDNELDVICEVIQGCIQPEPKLRPTMKDITSKLREVVNVTPDQASPRLSPLWWAELEILSVEAT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10291 697 SUPERFAMILY Protein kinase-like (PK-like) 418 666 IPR011009 -
Vifa1g10291 697 Pfam Protein tyrosine and serine/threonine kinase 447 666 IPR001245 GO:0004672|GO:0006468
Vifa1g10291 697 MobiDBLite consensus disorder prediction 296 330 - -
Vifa1g10291 697 FunFam Inactive receptor-like serine/threonine-protein kinase 378 486 - -
Vifa1g10291 697 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa1g10291 697 PANTHER PROTEIN MALE DISCOVERER 2 20 695 - -
Vifa1g10291 697 Gene3D Ribonuclease Inhibitor 29 201 IPR032675 -
Vifa1g10291 697 ProSiteProfiles Protein kinase domain profile. 369 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10291 697 Gene3D Transferase(Phosphotransferase) domain 1 487 679 - -
Vifa1g10291 697 FunFam Nuclear pore complex protein NUP107 30 178 - -
Vifa1g10291 697 SUPERFAMILY L domain-like 34 162 - -
Vifa1g10291 697 Gene3D Phosphorylase Kinase; domain 1 381 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10291 Vifa-Chr1 1714683257 1714687147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10291 69 677 Receptor kinase-like Gene Family AT5G56040 24.238 1.28e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa1g10291 PK_Tyr_Ser-Thr 4.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10291 - - adu:107468254 815.068