Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10289 ATGGATAGGAAATCAACACTTCTAATGAAAAAATATGAGGTAGGACGCATGCTTGGGCAAGGAAACTTTGCCAAAGTTTATCATGCAAGGAACATAAAGACAGGACAAAGTGTTGCCATTAAGGTGTTTAACAAAGACATGATCATGAGGGTTGGTTTGAAGGAGCAAATCAAGCGCGAAATCTCGGTGATGCGCCGCGTTAGACATCCAAACATTGTCGATTTCTACGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAACTCGTGAAAGGCGGCGAGCTTTTCAATAAAGTGTCCCGAGGGAGGCTGAGGGAAGATGTTGCTAGGAAATATTTCCAACAGCTTATCGAAGCTGTTGATCATTGTCACAGAAGAGGGGTTTATCACCGTGATCTTAAACCGGAAAATCTTCTCCTCGATGACAATGATAATCTCAAAGTCTTGGATTTCGGCCTTAGCGCGTTGTCCGAATCAAAAAACACAGATGGTCTTCTTCATACAACATGTGGAACTCCGGCTTACGTTGCACCCGAGGTTATCAAGAAAAAAGGCTATGATGGAGCCATGGCAGATATTTGGTCTTGTGGTGTTATTCTCTATGTTCTATTAGCAGGTTATCTTCCTTTCAGTGATAAAAATCTAATGGACATGTATAAGAAGATTGCGAAAGGAGATTACAGGTTTCCTCAATGGTTTCGCCCTGACGCGAAAAGGCTTCTTAATAGAATTCTTGATCCTAATCCAAGAACAAGAATTACTATTAACAAGATAATGCAGAATAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGGACCAGAATTACCGCCTTTATCGCCCACGCGAGGCGATATCTCTGATGTTTATAATGCATTTGATGATGTATCATCAACATCAAGTTCTAATGAAACTCCAAGAGCAATGTCTGTTAAAGACTATGAAGAATTTCCTATGAAACCGTATTGTTTCAATGCATTTGATATCATATCACTCTCTTCGGGATTCGATCTTTCTGGTTTATTCGAGAAAGATACTGGTGAAAGAACACACGCAAGATTTTCTACAAAAAGACCACCTTATGTAGTTGTGTCGAAACTTGAAGAGGTAGCACAATTAGATGGTAGATTTAAGGTTATGAAGCAAAATGGGATTGTTAGGCTGGAAGGAACTGAGGCAGGGTTAAACGGACAACTCAGTATAGATACAGAAATTTTTGAAGTTACTTCTTCATTGTATGTTGTTGAGGTGAACAAAATTGCTGGAGATATATTGGAATATAGGAGATTCTGGAACCAGTTCTTAAAGCCTTGTCTAGATGAAATTGCTTGGGTTTGGCAGGGATATGAGCAGTACATATAG 1368 0.394 MDRKSTLLMKKYEVGRMLGQGNFAKVYHARNIKTGQSVAIKVFNKDMIMRVGLKEQIKREISVMRRVRHPNIVDFYEVMASKTKIYFAMELVKGGELFNKVSRGRLREDVARKYFQQLIEAVDHCHRRGVYHRDLKPENLLLDDNDNLKVLDFGLSALSESKNTDGLLHTTCGTPAYVAPEVIKKKGYDGAMADIWSCGVILYVLLAGYLPFSDKNLMDMYKKIAKGDYRFPQWFRPDAKRLLNRILDPNPRTRITINKIMQNSWFRKGYKQIEGPELPPLSPTRGDISDVYNAFDDVSSTSSSNETPRAMSVKDYEEFPMKPYCFNAFDIISLSSGFDLSGLFEKDTGERTHARFSTKRPPYVVVSKLEEVAQLDGRFKVMKQNGIVRLEGTEAGLNGQLSIDTEIFEVTSSLYVVEVNKIAGDILEYRRFWNQFLKPCLDEIAWVWQGYEQYI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10289 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 430 - -
Vifa1g10289 455 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
Vifa1g10289 455 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10289 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vifa1g10289 455 FunFam Non-specific serine/threonine protein kinase 2 311 - -
Vifa1g10289 455 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vifa1g10289 455 Gene3D Kinase associated domain 1, KA1 320 447 - -
Vifa1g10289 455 CDD CIPK_C 327 442 - -
Vifa1g10289 455 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10289 455 Gene3D Transferase(Phosphotransferase) domain 1 2 319 - -
Vifa1g10289 455 Pfam NAF domain 324 383 IPR004041 GO:0007165
Vifa1g10289 455 FunFam Non-specific serine/threonine protein kinase 321 446 - -
Vifa1g10289 455 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10289 455 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vifa1g10289 455 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10289 Vifa-Chr1 1714526078 1714527445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10289 1 450 CBL-interacting serine-threonine protein kinases AT5G45820 60.310 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g10289 Pkinase 2.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10289 K07198 - gmx:100807927 645.58