Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10288 ATGGTAGGAGGCAAAAAGAATACACATTATACTATTGCATCCTCATGGTTGAGTTGGAACCCAGGATCTGCTTATGGAATTGGTTTTGCAGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTGTGCAAATCAACAAAGAGAATCGCAAGCAGCTTCCTTATCAAATTACAGGCATGGTTAAACCATCCAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGCAGGACGCATGTTTCACGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTGTTGCAATTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAACCAATTGAGGAGCTAGATAATCTACCTACAGAAGAGAAGGCTTTGCTGAATTCACTCCAAACTGGGAATAGGCTGATAGCTGCTGGCTATGTTCTATATTCATCTGCAACTATACGCTGCATCACCTTTGGCTCTGGTACACATGCATTCACGCTCGACCGCTCAACGGGAGACTTCATTCTCACAAATCCAAACATTAAAATTCCTCCTCGCGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGTTTAAGGAAATATATAGATACCGTGAGACAAGGAAAAGGTAGATATCCTAATAAGTACTCTGCAAGGTATATATGTTCGCTGGTGGCGGATCTCCACCGAACTTTGTTGTATGGGGGAGTGGCTATGAATCCGAGGGACCATCTTCGACTTGTTTATGAAGCAAACCCTCTTAGTTTCATTGTGGAGCAAGCTGGTGGAACAGGGTCCGATTGGAAAAGTAGGATTCTTTCACTTCAACCAGTTAAACTTCACCAAAGACTTCCTCTCTTTTTGGGGAGTTTGGAAGACATGGAAGAGTTGGAAAGTTATGGAGATGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA 1023 0.4164 MVGGKKNTHYTIASSWLSWNPGSAYGIGFAGSNIYVKNIDDSVSDEELKSQFVQINKENRKQLPYQITGMVKPSKLLTCFQWGALMVAGRMFHGKPLYVAFAQRKDVVAIVAFGMGLDKRDVGAVIHYSLPGSLEEPIEELDNLPTEEKALLNSLQTGNRLIAAGYVLYSSATIRCITFGSGTHAFTLDRSTGDFILTNPNIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPNKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGTGSDWKSRILSLQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGYEV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10288 340 PRINTS Fructose-1,6-bisphosphatase signature 185 208 IPR028343 GO:0042132
Vifa1g10288 340 PRINTS Fructose-1,6-bisphosphatase signature 304 329 IPR028343 GO:0042132
Vifa1g10288 340 PRINTS Fructose-1,6-bisphosphatase signature 154 177 IPR028343 GO:0042132
Vifa1g10288 340 PRINTS Fructose-1,6-bisphosphatase signature 211 238 IPR028343 GO:0042132
Vifa1g10288 340 SUPERFAMILY Carbohydrate phosphatase 146 327 - -
Vifa1g10288 340 Gene3D - 91 136 IPR027417 -
Vifa1g10288 340 FunFam Fructose-1,6-bisphosphatase, chloroplastic 202 338 - -
Vifa1g10288 340 SUPERFAMILY RNA-binding domain, RBD 16 105 IPR035979 GO:0003676
Vifa1g10288 340 Gene3D - 202 338 - -
Vifa1g10288 340 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 147 327 IPR000146 GO:0005975|GO:0016791
Vifa1g10288 340 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 204 327 IPR044015 -
Vifa1g10288 340 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 152 199 IPR033391 -
Vifa1g10288 340 Gene3D - 137 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10288 Vifa-Chr1 1714164262 1714168096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10288 32 120 Eukaryotic Initiation Factors Gene Family AT2G36660 36.735 1.39e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10288 K03841 - gmx:100793620 382.874