Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10287 ATGGCTGACGTGCTTTCTCAAAAATTCAAAACCACCCCGAACAACAGCAAGAAGGATCCATCTAATCTCTTATTGGGTCGCTTCGAAATCGGGAAGCTCCTCGGTCATGGAACATTCGCCAAGGTATACTACGCGAAGAATCTCAAAACCGGTGAAGGCGTAGCCATAAAAGTGATCGACAAGGAGAAGATTCTTAAAGGAGGTTTGGTCGCACACATAAAACGTGAGATCTCGATTCTTCGCCGCGTTCGTCATCCCAACATCGTGCAGCTCTTCGAGGTAATGGCTACGAAAACAAAGATTTATTTTGTAATGGAATATGTTCGGGGTGGTGAGCTTTTTAATAAGGTTGCCAAGGGTAGGTTGAAGGAAGAGGTTGCTAGAAAGTATTTTCAGCAGTTGATTTCCGCGGTTGGGTTTTGTCATGCTAGAGGTGTTTATCATAGGGATCTTAAGCCTGAGAATCTTTTGCTTGATGAGAATGGTAATTTGAAAGTGTCTGATTTTGGTTTGAGTGCTGTGTCTGATCAGATTAGGCAGGATGGTTTGTTTCATACTTTTTGTGGTACTCCTGCTTATGTAGCACCCGAGGTTTTGGCTAGGAAGGGGTATGATGGTGCTAAGGTTGATCTTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCATTTCATGATCAGAATGTTATGGCTATGTATAAGAAAATTTATAAGGGGGAGTTTAGGTGTCCGAGGTGGTTTTCGCCGGATTTATCTAAGCTGCTTATTCGTCTTCTTGATACGAAGCCGGAAACAAGGATTGCTATTCCTGAGATTATGGAGAATAGGTGGTTCAAAAAGGGGTTCAAACAGATTAAGTTTTATGTTGAGGATGATAGGCTTTGTAGTATTGATGATAATTTCGCTGACATTGAGGATGATTCGGCTTCTGTAACATCTGTTGCGTCTGTTGCGTCCTTAGCGTCTTTTTCTGATTACTCAATAGAATCTGATTCTGAGATTGAGACTAGAAGGAAAAATGGTCCTTTGCCAAGGCCTGCTAGTTTGAATGCTTTTGACATTATTTCATTCTCCCCCGGGTTTGATCTTTCTGGATTGTTTGAGGAAATAGGAGACGAGAACAGGATTGTGACTGCTGCACCGGTTTCAAGGATCATATCAAAATTGGAGGAGATTGCTCAATTGGTTAGGTTTTCTGTAAGGAAGAAGGATTGCAGGGTTAGCTTGGAGGGTACAAGAGAAGGTGTGAAGGGACCATTGACTATTGCTGTTGAGATATTTGAACTAACACCTTCTTTGGTTATTGTTGAGGTGAAGAAAAAAGGAGGCGACAGAGCCGAATACGAGAGATTCTGTAACGAAGAATTGAAACCTGGATTACAGAATTTGATGGCCTCGGAATCAGCAACTTCCTCAGCTTTGTCAATACCGCCTCCCGAGCCTACATTACTCCGCGTGCTTTCTGAACCAGTTCACAACCTGCTTTCAGAGCTTGATTTGCCGCCCTCTCTACCTGAAGACTCTCTTCCTGAAGAGTGA 1551 0.4275 MADVLSQKFKTTPNNSKKDPSNLLLGRFEIGKLLGHGTFAKVYYAKNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYKGEFRCPRWFSPDLSKLLIRLLDTKPETRIAIPEIMENRWFKKGFKQIKFYVEDDRLCSIDDNFADIEDDSASVTSVASVASLASFSDYSIESDSEIETRRKNGPLPRPASLNAFDIISFSPGFDLSGLFEEIGDENRIVTAAPVSRIISKLEEIAQLVRFSVRKKDCRVSLEGTREGVKGPLTIAVEIFELTPSLVIVEVKKKGGDRAEYERFCNEELKPGLQNLMASESATSSALSIPPPEPTLLRVLSEPVHNLLSELDLPPSLPEDSLPEE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10287 516 FunFam Non-specific serine/threonine protein kinase 20 107 - -
Vifa1g10287 516 Pfam NAF domain 350 406 IPR004041 GO:0007165
Vifa1g10287 516 CDD STKc_SnRK3 27 281 - -
Vifa1g10287 516 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 462 - -
Vifa1g10287 516 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Vifa1g10287 516 SUPERFAMILY Protein kinase-like (PK-like) 24 283 IPR011009 -
Vifa1g10287 516 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10287 516 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10287 516 CDD CIPK_C 354 465 - -
Vifa1g10287 516 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10287 516 Gene3D Kinase associated domain 1, KA1 348 469 - -
Vifa1g10287 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vifa1g10287 516 Gene3D Transferase(Phosphotransferase) domain 1 18 342 - -
Vifa1g10287 516 FunFam Non-specific serine/threonine protein kinase 350 468 - -
Vifa1g10287 516 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Vifa1g10287 516 FunFam Non-specific serine/threonine protein kinase 17 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10287 Vifa-Chr1 1713980091 1713981641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10287 1 471 CBL-interacting serine-threonine protein kinases AT4G18700 76.645 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g10287 Pkinase 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10287 - - gmx:100814720 835.869