Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10285 ATGAAGCTTTTTTACATGTTCTTGATGAATCTCCTATTGTTTATTACTCTCACACAATCAACATCATCATCTTCATGCAACATTGAAAATCAGAACCTTATATCAAAGGCTTTCCAATCTGTCTCTGGATTCAACTCTTCATTCTTCCAAACAAATGGCTCCTTCATCTGTTCAAACGGTGAGAATGAGATTAACATCATAAACCTTCCATCCAAAAACCTAACCGGAAACATCTCATGGAGATACCTTAAAAACATGACAACCTTAAAGTTTCTCGATCTCTCCGAAAATTGTCTACAAGGTCAAGTCCCAAACTGGTTCTGGAAAACCACTTCATCAAGTTTACAAACAGTGAATCTCTCCAACAACAGATTCGGTGGAAGCATTGCATTCCAAATGAAACCCTTTTCATCGTCACTACAAAATCTCAATCTCTCAAACAACAGATTCACAAACCAGGTTCATCTTTCATCTTTTCAAAACCTTAAAATCCTCGACCTTTCCAACAACAACCTCAACACTTTCCCTTCGGGGATTCAAAACCTCACGAAACTCAACCACCTCGATCTCTCGAACTGTAACATCAAAGCAAACATAAAACCCATTTCTCATCTCACTTCACTCTCTTTCTTAAACCTCTCGAACAATACCTTAAACGGTACTTTCCCTTATGACTTTCCATCTCTCGACAACCTTAAATTCCTCAACATCTCAAACAACAACTTCAAATCTTCATCTCCATTATCAAAACTAATCAAAAGATTCGGAACATCATCGTTCATTCACGCAGTTTCCTCAGTTTCAACATCCATTCTTGTCATATTATCCATATTAGCAATCTTTGGTTACAGAAAAAAACGTCAACAAGCAAAAAAGAACAAATGGGCAATCTCAATATCAAAACCAGTGATAGGATCAACAACAACCCTCAAATCAGGACCGTTCGAATTCGAAACAGAATCCGGAACGTCATGGGTGGCTGATCTGAAAGAACCATCTTCTGCAGCAGTTGTAATGTTCGAAAAACCATTGATGAACATCACGTTCGTTGATCTCATGACTGCCACATCATACTTCGGAAAAGATTCACAGCTTGCTGAAGGTAGATGTGGGCCCGTTTACCGTGCGGTTTTACCTGGTGACATACACGTGGCAATCAAGGTTCTTGAAAATGCGAGAGACGTTGATCATGATGACTCTGTCGCAACTTTCCTTGACTTGTCTCAGCTTAAACATCCCAATCTTTTGCCTCTTTCCGGCTACTGTATTGCAGGGAAGGAGAAGCTAGTTTTGTATGAGTTTATGTCAAACGGAGATTTAGGCCGGTGGCTACAAGAGTTACCGACGGGAGAGACTAATGTGGAAGATTGGAGCACTGACACATGGGAGATTCAAAATGGCGTCGGCTCGCGGACCCCTTCACCAGAGAAAATGGGGTGGCCGACGCGACATCGCATAGCGATAGGTGTAGCGCGTGGTCTAGCATTTCTCCACCATGCAGGGTCAAAGCCCGTCGTCCACGGGCATCTGGTGACATCGAACGTCCTCCTCGCCGATGACTTCGAGCCGCGAATAGCTGATTTTGGGTTCAGAAAATTCGGGCAACAATGTCCTCCAAATTGTAGTACTGAGACGGACGTTTATTGCTTTGGTGTGGTGCTTATGGAGCTTCTAACAGGGAAGCCTGGTACCGCGGAGACGGTTGTTTGGGTGAGGAAGCTTGTAAGAGAGGGTTATGGAGTGAGGGCGCTTGATGACAGGATCAAATTCGGTGGTGGTGACTCAGAGAGTCAAATGGTGGAGAGTCTCCGAGTTGCGTATCTTTGTACTGCTGAGTCGCCGGGGAAGAGGCCCACAATGCAGCAAGTTTTGGGGCTTCTCAAAGATATTCATCCTAGGGCTAGACTCGAATGA 1914 0.4347 MKLFYMFLMNLLLFITLTQSTSSSSCNIENQNLISKAFQSVSGFNSSFFQTNGSFICSNGENEINIINLPSKNLTGNISWRYLKNMTTLKFLDLSENCLQGQVPNWFWKTTSSSLQTVNLSNNRFGGSIAFQMKPFSSSLQNLNLSNNRFTNQVHLSSFQNLKILDLSNNNLNTFPSGIQNLTKLNHLDLSNCNIKANIKPISHLTSLSFLNLSNNTLNGTFPYDFPSLDNLKFLNISNNNFKSSSPLSKLIKRFGTSSFIHAVSSVSTSILVILSILAIFGYRKKRQQAKKNKWAISISKPVIGSTTTLKSGPFEFETESGTSWVADLKEPSSAAVVMFEKPLMNITFVDLMTATSYFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDSVATFLDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPTGETNVEDWSTDTWEIQNGVGSRTPSPEKMGWPTRHRIAIGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVREGYGVRALDDRIKFGGGDSESQMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPRARLE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10285 637 ProSiteProfiles Leucine-rich repeat profile. 139 160 IPR001611 GO:0005515
Vifa1g10285 637 Gene3D Phosphorylase Kinase; domain 1 319 434 - -
Vifa1g10285 637 SUPERFAMILY L domain-like 62 247 - -
Vifa1g10285 637 ProSiteProfiles Protein kinase domain profile. 359 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10285 637 FunFam Calmodulin-binding receptor kinase CaMRLK 138 248 - -
Vifa1g10285 637 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Vifa1g10285 637 SMART LRR_typ_2 182 212 IPR003591 -
Vifa1g10285 637 SMART LRR_typ_2 159 181 IPR003591 -
Vifa1g10285 637 SMART LRR_typ_2 229 251 IPR003591 -
Vifa1g10285 637 SMART LRR_typ_2 86 109 IPR003591 -
Vifa1g10285 637 ProSiteProfiles Leucine-rich repeat profile. 231 252 IPR001611 GO:0005515
Vifa1g10285 637 FunFam Putative LRR receptor-like serine/threonine-protein kinase 320 434 - -
Vifa1g10285 637 Pfam Protein tyrosine and serine/threonine kinase 362 532 IPR001245 GO:0004672|GO:0006468
Vifa1g10285 637 SUPERFAMILY Protein kinase-like (PK-like) 338 627 IPR011009 -
Vifa1g10285 637 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Vifa1g10285 637 Pfam Leucine rich repeat 139 195 IPR001611 GO:0005515
Vifa1g10285 637 Gene3D Ribonuclease Inhibitor 24 154 IPR032675 -
Vifa1g10285 637 Gene3D Ribonuclease Inhibitor 155 270 IPR032675 -
Vifa1g10285 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 37 249 - -
Vifa1g10285 637 PRINTS Leucine-rich repeat signature 205 218 - -
Vifa1g10285 637 PRINTS Leucine-rich repeat signature 162 175 - -
Vifa1g10285 637 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vifa1g10285 637 Gene3D Transferase(Phosphotransferase) domain 1 435 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10285 Vifa-Chr1 1712785287 1712788373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10285 44 630 Receptor kinase-like Gene Family AT5G07280 30.322 1.93e-71 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vifa1g10285 PK_Tyr_Ser-Thr 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10285 - - gmx:100778920 847.81