Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10278 ATGGAACGTGTTAAAGTGTTTACTTGGCTTGTTTTCTTTGGTTTTCTATGGAGTTTGGTGTCATTGGTTGTTGAGGGTACTGAGAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTTCTTTGATGTCCATGAAGAGTAAGATGAATGATGGGTTGCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTTGCTTGTTCTTCTGAGGGTTATGTCATTTCCTTGGAAATGGCCAGTGCTGGTTTATCTGGAATAATTTCCTCAAGAATTGGAAATTTGAGCCATCTTCGAACATTGTTTTTGCAGAACAATCAGTTATCAGGTCCTATACCGGCTGAGATAGGAAACCTGTTAGAGCTTCAAACTCTTGATCTTTCCAGCAACCATCTTATTGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAGCTATCTGGACAGATCCCTCAACCTGTTGCGAATCTCACAGGACTTTCCTTCTTGGATTTATCATTCAACAATCTCAGTGGTCCTACTCCCAAAATTTTAGCAAAAGGCTATAGTATTTCAGGAAACAACTTTCTATGTACATCATCCTCGCAACTTTGTATGGGCGGTTCAAAGCCGGTAAATGATGGTTCACTTTCAGATACACGATCTTCTCAAACAGTCAACAGTCATCGGCATACATTGCTTTCGGTCATTATTGGCGTTAGTTGCACATTTGTAATTTCAGTGATGCTGCTCATCTATTGGTTGCATTGGTACAAATCACGCATCCTCTATTCATCTTACGTGGAGCAAGATTGCGAATTCGGTATTGGTCACTTGAAGAGGTTCTCCTTCCGTGAATTGCAAGTCGCTACTGGAAATTTCACATCGAAAAATATTGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGTCTTGCAAACAAAATGTTGGTTGCGGTAAAGAGGTTGAAAGATCCCAATTATACCGGAGAAGTGCAGTTTCAAACCGAGGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCATTAATGCCCAACGGAAGTGTTGCTGATCGCTTGAGAGAGAGTTTCCGCGGAAAGCCGTGTTTGGATTGGAACAGGCGAATGCGCATTGCCGTTGGAGCTGCACGAGGTCTTCTGTATTTGCACGAACAATGCAATCCTAAAATAATCCATAGAGATGTTAAGGCCGCAAACATTTTGTTAGACGAAAGTTTTGAAGCTGTGGTGGGAGATTTCGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGCGGCACTGTAGGACATATTGCCCCCGAGTATCTATCAACCGGTCAGTCTTCTGAAAAAACAGATGTTTTCGGATTCGGTATATTACTTTTGGAGCTCATAACCGGACAAAAAGCACTCGATGCTGGAAATGTTCCTGTCCAAAAGGGAATGATTCTTGATTGGGCTAGAACTTTATTTGAGGAGAAGCGTCTTGAAGTGTTAGTTGATAGAGATCTAAAGGGATGCTATGATCCGGTAGAGTTAGAAAAAGCGGTCGAGTTATCTTTGCAATGTACTCAATCTGTTCCGAGTTTGAGACCAAAAATGTCAGAGGTTTTGAAGATTCTTGAAGGGCTTATTGGATTGTCATTGAGACCAGAAGAGTCACAACAAGGAGGGGGTAACATATATGATGAAAGAACTTGCAGCTTCTCTCATAATTATAGTGATGTTCACGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTAGGTGA 1887 0.4149 MERVKVFTWLVFFGFLWSLVSLVVEGTESLLSPKGVNYEVASLMSMKSKMNDGLHVMDGWDINSVDPCTWNMVACSSEGYVISLEMASAGLSGIISSRIGNLSHLRTLFLQNNQLSGPIPAEIGNLLELQTLDLSSNHLIGNIPSSLGSLTHLSYLRLSKNKLSGQIPQPVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQLCMGGSKPVNDGSLSDTRSSQTVNSHRHTLLSVIIGVSCTFVISVMLLIYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQVATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPLMPNGSVADRLRESFRGKPCLDWNRRMRIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVPVQKGMILDWARTLFEEKRLEVLVDRDLKGCYDPVELEKAVELSLQCTQSVPSLRPKMSEVLKILEGLIGLSLRPEESQQGGGNIYDERTCSFSHNYSDVHEEPSFIIEAIELSGPR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10278 628 Gene3D Transferase(Phosphotransferase) domain 1 380 580 - -
Vifa1g10278 628 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Vifa1g10278 628 SMART serkin_6 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10278 628 ProSiteProfiles Protein kinase domain profile. 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10278 628 Gene3D Ribonuclease Inhibitor 36 216 IPR032675 -
Vifa1g10278 628 FunFam Somatic embryogenesis receptor kinase 1 274 379 - -
Vifa1g10278 628 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 217 - -
Vifa1g10278 628 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vifa1g10278 628 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vifa1g10278 628 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
Vifa1g10278 628 FunFam Somatic embryogenesis receptor-like kinase 1 380 595 - -
Vifa1g10278 628 SMART LRR_typ_2 102 125 IPR003591 -
Vifa1g10278 628 SMART LRR_typ_2 174 197 IPR003591 -
Vifa1g10278 628 SMART LRR_typ_2 126 150 IPR003591 -
Vifa1g10278 628 Gene3D Phosphorylase Kinase; domain 1 274 378 - -
Vifa1g10278 628 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10278 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 575 - -
Vifa1g10278 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vifa1g10278 628 SUPERFAMILY L domain-like 39 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10278 Vifa-Chr1 1712082815 1712085736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10278 44 628 Receptor kinase-like Gene Family AT5G45780 69.454 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g10278 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10278 - - gmx:100810610 1073.15