Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10277 ATGGAACGTGTTAAAGTGTTTACTTGGCTTGTTTTCTTTGGTTTTCTATGGAGTTTGGTGTCATTGGTTGTTGAGGGTACTGAGAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTTCTTTGATGTCCATGAAGAGTAAGATGAATGATGGGTTGCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTTGCTTGTTCTTCTGAGGGTTATGTCATTTCCTTGGAAATGGCCAGTGCTGGTTTATCTGGAATAATTTCCTCAAGAATTGGAAATTTGAGCCATCTTCGAACATTGTTTTTGCAGAACAATCAGTTATCAGGTCCTATACCGGCTGAGATAGGAAACCTGTTAGAGCTTCAAACTCTTGATCTTTCCAGCAACCATCTTATTGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAGCTATCTGGACAGATCCCTCAACCTGTTGCGAATCTCACAGGACTTTCCTTCTTGGATTTATCATTCAACAATCTCAGTGGTCCTACTCCCAAAATTTTAGCAAAAGGCTATAGTATTTCAGGAAACAACTTTCTATGTACATCATCCTCGCAACTTTGTATGGGCGGTTCAAAGCCGGTAAATGATACACGATCTTCTCAAACAGTCAACAGTCATCGGCATACATTGCTTTCGGTCATTATTGGCGTTAGTTGCACATTTGTAATTTCAGTGATGCTGCTCATCTATTGGTTGCATTGGTACAAATCACGCATCCTCTATTCATCTTACGTGGAGCAAGATTGCGAATTCGGTATTGGTCACTTGAAGAGGTTCTCCTTCCGTGAATTGCAAGTCGCTACTGGAAATTTCACATCGAAAAATATTGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGTCTTGCAAACAAAATGTTGGTTGCGGTAAAGAGGTTGAAAGATCCCAATTATACCGGAGAAGTGCAGTTTCAAACCGAGGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCATTAATGCCCAACGGAAGTGTTGCTGATCGCTTGAGAGAGAGTTTCCGCGGAAAGCCGTGTTTGGATTGGAACAGGCGAATGCGCATTGCCGTTGGAGCTGCACGAGGTCTTCTGTATTTGCACGAACAATGCAATCCTAAAATAATCCATAGAGATGTTAAGGCCGCAAACATTTTGTTAGACGAAAGTTTTGAAGCTGTGGTGGGAGATTTCGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGCGGCACTGTAGGACATATTGCCCCCGAGTATCTATCAACCGGTCAGTCTTCTGAAAAAACAGATGTTTTCGGATTCGGTATATTACTTTTGGAGCTCATAACCGGACAAAAAGCACTCGATGCTGGAAATGTTCCTGTCCAAAAGGGAATGATTCTTGATTGGGCTAGAACTTTATTTGAGGAGAAGCGTCTTGAAGTGTTAGTTGATAGAGATCTAAAGGGATGCTATGATCCGGTAGAGTTAGAAAAAGCGGTCGAGTTATCTTTGCAATGTACTCAATCTGTTCCGAGTTTGAGACCAAAAATGTCAGAGGTTTTGAAGATTCTTGAAGGGCTTATTGGATTGTCATTGAGACCAGAAGAGTCACAACAAGGAGGGGGTAACATATATGATGAAAGAACTTGCAGCTTCTCTCATAATTATAGTGATGTTCACGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTAGGTGA 1872 0.4151 MERVKVFTWLVFFGFLWSLVSLVVEGTESLLSPKGVNYEVASLMSMKSKMNDGLHVMDGWDINSVDPCTWNMVACSSEGYVISLEMASAGLSGIISSRIGNLSHLRTLFLQNNQLSGPIPAEIGNLLELQTLDLSSNHLIGNIPSSLGSLTHLSYLRLSKNKLSGQIPQPVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQLCMGGSKPVNDTRSSQTVNSHRHTLLSVIIGVSCTFVISVMLLIYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQVATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPLMPNGSVADRLRESFRGKPCLDWNRRMRIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVPVQKGMILDWARTLFEEKRLEVLVDRDLKGCYDPVELEKAVELSLQCTQSVPSLRPKMSEVLKILEGLIGLSLRPEESQQGGGNIYDERTCSFSHNYSDVHEEPSFIIEAIELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10277 623 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Vifa1g10277 623 SUPERFAMILY Protein kinase-like (PK-like) 282 572 IPR011009 -
Vifa1g10277 623 Gene3D Ribonuclease Inhibitor 36 216 IPR032675 -
Vifa1g10277 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 570 - -
Vifa1g10277 623 Pfam Protein kinase domain 300 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10277 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 217 - -
Vifa1g10277 623 SMART serkin_6 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10277 623 Gene3D Phosphorylase Kinase; domain 1 269 373 - -
Vifa1g10277 623 Gene3D Transferase(Phosphotransferase) domain 1 375 575 - -
Vifa1g10277 623 ProSiteProfiles Protein kinase domain profile. 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10277 623 SMART LRR_typ_2 102 125 IPR003591 -
Vifa1g10277 623 SMART LRR_typ_2 174 197 IPR003591 -
Vifa1g10277 623 SMART LRR_typ_2 126 150 IPR003591 -
Vifa1g10277 623 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Vifa1g10277 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vifa1g10277 623 SUPERFAMILY L domain-like 39 208 - -
Vifa1g10277 623 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vifa1g10277 623 FunFam Somatic embryogenesis receptor-like kinase 1 375 590 - -
Vifa1g10277 623 FunFam Somatic embryogenesis receptor kinase 1 269 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10277 Vifa-Chr1 1712082815 1712085736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10277 44 623 Receptor kinase-like Gene Family AT5G45780 70.103 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa1g10277 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10277 - - gmx:100810610 1079.32