Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10276 ATGGGTTTAGATGAGAGAAAAGACAGAGTTGGGGTATTGGATTCGGTTCATGAAGTGATTGCACTTGATGGGAGCAATAATTTGGTTGTGGGGGATAGAGATTGTGTTAATGGAGCATTTGGAACTTCAAGAGAAGTGGGTATGAATTCAGGATCCAGTAAGGAGGAGGCTGAGGAAGTTAAGGTTCATGAAAAGTGTGATGAAGAAAATAATTATGCCGAATTGCCAGTGGTTGATCAAGAAACTAGTTATAATTCAAGCAATTTGGTTAATCAGGAAGTGGTTGAGACAGTGGTTGTTGTAGTAGAGTCTGTTCATGTTCAGCCTGTTCAGACTGAGTATGTTAATGGAGAGGATAGGAAATTAGAAGCAAAAGCTGATGAATCAGGGCTTAGTTTGGTTTCCATGAAAACCCCGAAAGGGGTGTCTGAAATCGATAAAGATTCGTGCGTGATTGATATGAAGTGCAGTAGTCATAAAGGGTTTTCTGAGAATTCACAATGTGAAAGGATTTGTAGGATTTGTCATCTGGCTTTTGGGCCGGCATCAGATGCAGCTATTGTTGGAAATGCGAGTGCTACAAGCGGAGATTTTGTTCAACTTGGTTGCGCGTGTAAAGATGAACTTGGCATTGCACATGTTTATTGTGCTGAAGTGTGGTTCAAGCTCAAGGGAAACAGACTGCGAAAAATGTTTCGGGTGTTACTAATAACGGAGTTATGGAAGAGTGGAATGATAGAAGGTTCCTGGACAGCGGCGGTAACTCATCGCGCAGCTTTCATTATGCCATGGTTTTTTCATGTAAACATGTTCTAG 816 0.4142 MGLDERKDRVGVLDSVHEVIALDGSNNLVVGDRDCVNGAFGTSREVGMNSGSSKEEAEEVKVHEKCDEENNYAELPVVDQETSYNSSNLVNQEVVETVVVVVESVHVQPVQTEYVNGEDRKLEAKADESGLSLVSMKTPKGVSEIDKDSCVIDMKCSSHKGFSENSQCERICRICHLAFGPASDAAIVGNASATSGDFVQLGCACKDELGIAHVYCAEVWFKLKGNRLRKMFRVLLITELWKSGMIEGSWTAAVTHRAAFIMPWFFHVNMF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10276 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 240 IPR013083 -
Vifa1g10276 271 PANTHER ZINC FINGER, RING-CH-TYPE 58 227 - -
Vifa1g10276 271 SMART ringv_2 171 230 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10276 Vifa-Chr1 1711671025 1711672150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10276 166 228 C3H Transcription Factor Family AT5G05830 49.206 1.49e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10276 - - gmx:100776373 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10276 1 1711671025 1711672150 Vifa1g10276 1 1711671025 1711672150 ECH