Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10274 ATGAATAATACAGCACTTTGTGGCCTTCTGGGTATTGCATGCATAATAGTTCTAATGTTCAAAAGGAAAAAAGTTGAAAATCCACTTGAAAGGGATTTATCAACTAATTTAGGGGCTTCAAAAAGGATCTCCTATGGTGAACTTGTGCAAGCCACTGGTGGATTCAGTGAGAGTAACTTGCTTGGAAAGGGTGGTTGTGGATCTGTGTATCAAGGAATGCTTTCTAATGGGAAGATGGTAGCAGTTAAAGTACTTGACTTGAAATTGGAAGTAGCATCAAGAAGTTTTGATGCGGAATGCAAGGCAATGCGCAATCTTCGACATCGAAACCTTGTTGAGATTATTACTAGTTGTTCAAGTGTAAATTTCAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTTTGGAAAAATGGTTATACTCGGATAACTATTTTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATATGCCCTGGAGTATCTCCATCATGGTTCTTCAATACCTGTGGTTCATTGTGATCTGAAGCCTAGTAATGTGTTACTTGATAAAAATATGGTTGCACATGTGAGTGATTTTGGAATTTCTAAACTCTTGGATGAAGGACATTCTAAAACTCATACAGAGACTCTAGCCACTCTTGGCTATGTTGCACCAGAGTATGGTTCTAAGGGAGTTATTTCAGTTAAAGGAGACGTGTACAGCTATGGAATAATGTTAATGGAAATCTTCACAGGAAAGAAGCCAACAAATGAAATGTTTGCAGGAGAATTAACCTTGAAAACTTGGATTAGTGAATCAATGGTGAGTTCAGTCATGGAAGTTGTGGATTTCAATTTAGTCTCTCAGCAAGATAAAGAAATTCATGAATTTTTAGCTCATGTATCATCTATTTTGGCTTTAGCATTGAGGTGTTGTGAAGACTCACCTGAGGCACGGATTAATATGATTGATGTAACTGCATCATTAATCAAAATCAAGACCTTATTCATCCATTGA 1011 0.365 MNNTALCGLLGIACIIVLMFKRKKVENPLERDLSTNLGASKRISYGELVQATGGFSESNLLGKGGCGSVYQGMLSNGKMVAVKVLDLKLEVASRSFDAECKAMRNLRHRNLVEIITSCSSVNFKSLVMEFMSNGSLEKWLYSDNYFLDFLQRLNIMIDVAYALEYLHHGSSIPVVHCDLKPSNVLLDKNMVAHVSDFGISKLLDEGHSKTHTETLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTGKKPTNEMFAGELTLKTWISESMVSSVMEVVDFNLVSQQDKEIHEFLAHVSSILALALRCCEDSPEARINMIDVTASLIKIKTLFIH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10274 336 Gene3D Phosphorylase Kinase; domain 1 37 130 - -
Vifa1g10274 336 ProSiteProfiles Protein kinase domain profile. 55 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10274 336 SMART serkin_6 55 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10274 336 FunFam Serine-threonine protein kinase plant-type 35 130 - -
Vifa1g10274 336 SUPERFAMILY Protein kinase-like (PK-like) 37 327 IPR011009 -
Vifa1g10274 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vifa1g10274 336 Gene3D Transferase(Phosphotransferase) domain 1 131 333 - -
Vifa1g10274 336 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 131 336 - -
Vifa1g10274 336 Pfam Protein kinase domain 56 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10274 336 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10274 Vifa-Chr1 1711559642 1711561140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10274 21 335 Receptor kinase-like Gene Family AT3G47570 41.791 1.85e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g10274 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10274 - K13420 mtr:25485995 470.7