Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10269 ATGGAAATTGGTCATCTCAATCAACTTCAAATTCTAGAATTGGGAAATAACAGTTTGAATGGTGTTATCCCTTTGAATCTCTTCAACATGTCAACATTGGAATATTTGACTCTTCAACTAAATTCTCTCTCGGGTATTCTTCCATCAAATATGGGATTAGGCCTTCCAAACCTACAAGAACTACACGTGTATGGAAACAGGTTTGTTGGAAATATTCCAAACAGTATTTCCAATGCTTCAAATCTCATTAAACTTGACTTGAGTGAAAATGAGTTTAGTGGAATTATACCCACTTCTTTGGGAGATTTAAGTTTCATCCAAAATCTCTACTTAGCTAGCAATAATTTAACAATGGATGATTCTCATGAATTCAACTTCCTTACTTCCCTTACAAGTTGTAGATATTTGGAATACCTTGATATATCAGATAATAGTTTACTATCAAAACTTCCCAAGTCCATTGGAAACTTATCTTTAGAAAACTTTGTGGCAACTTCTTGTGGAATTAATGGAAATATTCCGCTAGAAATCGGAAACATGAGCAACCTGATTCGACTATCTCTAAATAGTAATGATTTAAATGGACCAGTCCCTATAACAATTAAAGGGTTACATAAACTTCAATCTTTAGATCTTGATGACAATGGACTTCAAGGATCTTTAGCTCATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGTTGTATTTAATAAGCAATAAGTTTTTTGGTGTGTTGCCAACATGCTTGGGAAACATGACCTCTCTTAGAAAGTTTCACATTGGATCTAATAATTTGAACTCTAAAATACCTTCTTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAGACTTATCCTCTAATGCTTTAATTGGAAATCTTCCATTTGAGATTAACAATTTGAGAGCTCTAGTACTATTAGATCTCTCAAAAAATCAATTTTCAAACAACATTCCACCAACCATAAGTCTCTTGGAAACTTTAGAAACTCTCTCCTTAGCATATAACAAATTGAAAGGTCCTATCCCAACATCACTTGGTGAAATGGTAAGCTTGAACTTCTTGGACTTGTCTCAAAATCTTATAACAGGTGAGATCCCAAAGTCCTTAGAGTCACTTTCATATCTTAACTACCTTAATCTATCATACAATAGATTGGAAGGAGAGATTCCAAATGGAGGACCTTTTAAAAGCTTCACAGCTCAATCTTTCGTTCATAACAAAGCACTTTGTGGTAATCCTCTCTTACAAGTACCTCCATGTGATAAACATGTTAGGAAAATGTCAATGAGAAAGAAGTTGTTAATCATATGCAATTCATCCATAATTGTTGTGCTAGGCATTTTGGTTGTTGTGTGCATGATACTTCGAATGCATAAAAGGAACAAGATTGGAAATCCAATTGAAAAAGATTTATCAACTTTAGGGGCTCCAAGTAGGATTTCCTATTATGAACTTGTGCAAGCGACTAATGGATTTAGTGAGAGTAATTTACTTGGAAAGGGTGGTTTTGGATCTGTGTATCAAGGAATGCTTTCTAGTGGAAAGATGGTAGCAGTTAAAGTGCTTGATTTAACATTGGAAGCAACATTAAGAAGTTTTGATGCAGAATGCAATGCAATGCGCAATCTTCGACATCGAAATCTTGTTGAGGTTATTACTAGTTGTTCCAATGATGATTTCAAATCTTTAGTGATGGAGTTTATGCCAAATGGAAGTGTGGAAGAATGGTTATATTCAAATAACTATTGTTTAAGTTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATCTGCACTCGAGTATCTCCATTATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTGGATGAAGATATGGTTGCACATGTGAGTGATTTTGGCATTTCCAAGCTCTTGGATGAAGGACATTCTAAAACTCATACTGAGACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGTTCTAAGGGAGTCATTTCTGTTAAGGGGGATGTGTATAGCTATGGAATAATGCTAATGGAAATCTTCACAGCAAAGAAGCCAACAAATGAAATGTTTGCAGAAGAATTAACTTTGAAAACTTGGATTAGTGAGTCAATGGACAGATCAATTATGGAAATTGTGGATTTCAATTTAGTCTCACAACATGAGAAAGAAATTCATGAAATTTTAGCCTTAGCACTGAGATGTTGTGAAGATTCACCTGAAGCACGGATTAATATGACACATGTAACTACTTCATTGATCAAAATAAAAAATGTTTGTGTGTGA 2298 0.3446 MEIGHLNQLQILELGNNSLNGVIPLNLFNMSTLEYLTLQLNSLSGILPSNMGLGLPNLQELHVYGNRFVGNIPNSISNASNLIKLDLSENEFSGIIPTSLGDLSFIQNLYLASNNLTMDDSHEFNFLTSLTSCRYLEYLDISDNSLLSKLPKSIGNLSLENFVATSCGINGNIPLEIGNMSNLIRLSLNSNDLNGPVPITIKGLHKLQSLDLDDNGLQGSLAHELCEIRSLSELYLISNKFFGVLPTCLGNMTSLRKFHIGSNNLNSKIPSSFWNLKDILEVDLSSNALIGNLPFEINNLRALVLLDLSKNQFSNNIPPTISLLETLETLSLAYNKLKGPIPTSLGEMVSLNFLDLSQNLITGEIPKSLESLSYLNYLNLSYNRLEGEIPNGGPFKSFTAQSFVHNKALCGNPLLQVPPCDKHVRKMSMRKKLLIICNSSIIVVLGILVVVCMILRMHKRNKIGNPIEKDLSTLGAPSRISYYELVQATNGFSESNLLGKGGFGSVYQGMLSSGKMVAVKVLDLTLEATLRSFDAECNAMRNLRHRNLVEVITSCSNDDFKSLVMEFMPNGSVEEWLYSNNYCLSFLQRLNIMIDVASALEYLHYGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGHSKTHTETLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTAKKPTNEMFAEELTLKTWISESMDRSIMEIVDFNLVSQHEKEIHEILALALRCCEDSPEARINMTHVTTSLIKIKNVCV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10269 765 Gene3D Phosphorylase Kinase; domain 1 475 567 - -
Vifa1g10269 765 Pfam Leucine rich repeat 229 289 IPR001611 GO:0005515
Vifa1g10269 765 Pfam Leucine rich repeat 56 116 IPR001611 GO:0005515
Vifa1g10269 765 SUPERFAMILY L domain-like 165 415 - -
Vifa1g10269 765 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 568 765 - -
Vifa1g10269 765 SUPERFAMILY L domain-like 3 219 - -
Vifa1g10269 765 FunFam Serine-threonine protein kinase plant-type 473 567 - -
Vifa1g10269 765 SUPERFAMILY Protein kinase-like (PK-like) 472 757 IPR011009 -
Vifa1g10269 765 Pfam Protein kinase domain 493 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10269 765 SMART serkin_6 492 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10269 765 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Vifa1g10269 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Vifa1g10269 765 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Vifa1g10269 765 PANTHER OS04G0122200 PROTEIN 4 761 - -
Vifa1g10269 765 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 129 424 - -
Vifa1g10269 765 ProSiteProfiles Protein kinase domain profile. 492 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10269 765 Pfam Leucine Rich Repeat 136 157 IPR001611 GO:0005515
Vifa1g10269 765 Gene3D Ribonuclease Inhibitor 128 421 IPR032675 -
Vifa1g10269 765 SMART LRR_typ_2 348 372 IPR003591 -
Vifa1g10269 765 SMART LRR_typ_2 204 228 IPR003591 -
Vifa1g10269 765 SMART LRR_typ_2 252 275 IPR003591 -
Vifa1g10269 765 SMART LRR_typ_2 6 30 IPR003591 -
Vifa1g10269 765 SMART LRR_typ_2 300 324 IPR003591 -
Vifa1g10269 765 SMART LRR_typ_2 55 79 IPR003591 -
Vifa1g10269 765 Gene3D Transferase(Phosphotransferase) domain 1 568 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10269 Vifa-Chr1 1711427263 1711429691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10269 2 761 Receptor kinase-like Gene Family AT3G47570 38.339 2.74e-168 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g10269 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10269 - K13420 mtr:25485995 1096.26