Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10267 ATGGAGGGTGATAATTCAACTTGTAATGGAAATCTCGATGCAGTTTTAAATGTAGACGACAATGCAACACAAATGTGTGATGACTCAAGCATTGAAGCTGATGTTCCTCTTTTACAGAAGTTGATAGCAGAGGTGGTGGGAACATTCTTCTTAATATTTATTGGATGTGGTGTTGTAGTTACAAATCTTAACAATGATAATGTAGTGACACTTCTTGGAATCGCAATTGTTTGGGGACTTTGCGTTGTGGTATTGGTATATTCTCTTGGCCATATTTCTGGTGCTCATTTTAATCCTGCTGTTACAATTGCTCATGCATCTACCAAAAGATTTCCATTGGTGCAGGTACCACCATATATAATCGCTCAACTCGTTGGATCCCTACTTGCAAGTGGAGCTCTGAAACTTGTATTCAATGGCAAAGAAAATCAATTTGTAGGAACACTTCCAGCTGGTTCTGACCTCCAAGCTTTTGTCATTGAATTTATAATTACTTTCTATCTTATGTTCATCATTTCTGGAGTTGCCACCGATGACAGAGCGATCGGTGAATTGGCTGGACTTGCAGTTGGATCTGCAATTATTCTAAATGTGTTGTTTGCTGGGCCAATCACAGGAGCATCAATGAATCCAGCGAGAAGTTTAGGTCCAGCTATTGTGCACCACGAATATAGAGGGATATGGATTTATTTAATTTCACCTATTCTAGGAGCTTTGGCTGGTACATGGACATATACTTTTATCAGAACCACAAACAAACCAGTACGTGAGATCACAAAAAGTTGTTCATTCCTTAAACAATCGGGAAGGAAGTGA 816 0.3909 MEGDNSTCNGNLDAVLNVDDNATQMCDDSSIEADVPLLQKLIAEVVGTFFLIFIGCGVVVTNLNNDNVVTLLGIAIVWGLCVVVLVYSLGHISGAHFNPAVTIAHASTKRFPLVQVPPYIIAQLVGSLLASGALKLVFNGKENQFVGTLPAGSDLQAFVIEFIITFYLMFIISGVATDDRAIGELAGLAVGSAIILNVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYLISPILGALAGTWTYTFIRTTNKPVREITKSCSFLKQSGRK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10267 271 Gene3D Glycerol uptake facilitator protein. 11 259 IPR023271 -
Vifa1g10267 271 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Vifa1g10267 271 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vifa1g10267 271 PANTHER AQUAPORIN NIP2-1 31 266 IPR034294 -
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10267 271 Pfam Major intrinsic protein 35 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10267 Vifa-Chr1 1711380103 1711381377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10267 23 271 Major Intrinsic Protein MIP AT5G37820 59.839 3.78e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10267 K09874 - gmx:100812577 404.831