Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10257 ATGAAGAGTTGTGAAGAATGGAAACCTTTTATGATAATGATAGCAATTGATGTTTCTTTTGCTATTGTGAATATTCTTCTCAAGAAAGTTCTTGAAGAAGGAATGAACCATTTGGTTTTTATCACGTATCGTCTCTCGATTGCTACTGTTTTTGTCGGCTCGATCGGTTACTTTAAGGAAAGAAATAGCAGACCACAAGTCACGTTTCGAATTTTATGCTACCTCTTCTTCAGTGGCATTGTTGGAGCATCAGTCACACAATACTTCTTCCTCCTGGGGATCCAATATACTTCAGCTACGTTTGCTTGCGCTTTTCTCAACATGGTGCCTGTGGTCACATTCCTATTGGCATTGCCATTTGGATTAGAGACTGTGAGCATCAAATGCAACAGTGGAAGAGCCAAGATTCTTGGTACATTGGTGTGTATAGTTGGAGCGTTGATGTTGACACTTTTCAAAGGAAAGGGACTGTTTAATTTTTCGCACTCACAGTCATCGGTGAAGTTAGCATCTACAAGAACACCAGAGAAATGGACTATTGGTGTCATAGCTTTGATTTTAGGAACACTCTTTTGGTCTTCGTGGTACATTTTACAATCTAAAATAAGTAAAAGATATCCATGCCAGTATTCTAGCACAGCAATCATGAGCTTCTTTGGAGCCATTCAATCCGCTGTCATTTGCTTGTTCATTGACCATGACTTGTCTATATGGGCTCTCAGCGGAAAGATACAAATAATAGCTATTTTGTATGCTGGAATAGTTGGATCAGGTTTGTGTTTTGTGGGCATGTCATGGTGTGTCAAGAAGAGAGGTCCCGTCTTTACGGCTGCATTCAGTCCATTTGTTCAGATAATGGCAGGGATGCTTGATATTCCTGTCTTGCATGAACAACTCTATCTTGGAAGTGTGGTGGGATCAATCTTGGTGATGATTGGACTATACATTCTTCTGTGGGGTAAGAGCAAGGAAGCTCAGGAGCGTTTGATTAAGCTAGCAGAGGAAGCTGCAAAAACCAAAGAACAAGAGACACAACAACCTCAAATACAACTCTTAACAGTGTCTTGTGACTCAAGGTGTCAATAA 1086 0.4042 MKSCEEWKPFMIMIAIDVSFAIVNILLKKVLEEGMNHLVFITYRLSIATVFVGSIGYFKERNSRPQVTFRILCYLFFSGIVGASVTQYFFLLGIQYTSATFACAFLNMVPVVTFLLALPFGLETVSIKCNSGRAKILGTLVCIVGALMLTLFKGKGLFNFSHSQSSVKLASTRTPEKWTIGVIALILGTLFWSSWYILQSKISKRYPCQYSSTAIMSFFGAIQSAVICLFIDHDLSIWALSGKIQIIAILYAGIVGSGLCFVGMSWCVKKRGPVFTAAFSPFVQIMAGMLDIPVLHEQLYLGSVVGSILVMIGLYILLWGKSKEAQERLIKLAEEAAKTKEQETQQPQIQLLTVSCDSRCQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10257 361 Coils Coil 322 343 - -
Vifa1g10257 361 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020
Vifa1g10257 361 Pfam EamA-like transporter family 180 318 IPR000620 GO:0016020
Vifa1g10257 361 PANTHER WAT1-RELATED PROTEIN 8 335 IPR030184 GO:0016020|GO:0022857
Vifa1g10257 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 323 - -
Vifa1g10257 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10257 Vifa-Chr1 1709105098 1709107519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10257 7 252 Nodulin-like Gene Family AT3G30340 49.206 2.82e-86 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10257 - - gmx:100803670 586.645