Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10255 ATGGTAACACCGGTGCCTGATAATGGATTCCGTAGCAGAAAGAAGTCATCAAGGGGACACCACAGGTTTGTAGGAGTTCGTCAAAGGCCGTCGGGAAGATGGGTGGCAGAGATCAAAGACTCTTTACAGAAAGTTAGGCTTTGGCTCGGAACATTCGACACAGCTGAAGAAGCCGCTCGTGCTTATGATACAGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAGTTACCAGAATCTGCAACAAATGGAGGTAATGCTAAGCGAGGTTTGGGTTCGGGTTCTAAGTTCGTGCTAGAGAATACCGAGCCATTTTCTTTTGAAGATGTTAGTGAATCAGGTTCAGGTTCTGATGGTCTTCTTGGTGCACTCAAGGCAAAACTTTGTGATGGAAAAGAAGGGAAATTTTCATTTTCATTTCCTTCTGTTAGTATGGTTTCAAAATCAACACAAAACAGTTCTTGGAAGAAAGAATCATCATTATCATCATCATCAGCTACTTATTGCCTCTCTCAGATGAATGAAACTCATGCTAACCCTAACAGTATACCAAACTCATTGAGTACTTCATCAAAAACTTTTGCTAAGAGTTTGATTATCCCAAATCATGATAATGAAATATGTCAAACTCAAACACCACCTATGACAAACATGTTATGGTCTAATGAAATGGAAAATGAATATCCTTGGCCTATTCAGATGAATCATGTTCTTCATGACAATAGTACTACTAATCTTGTTGCATCTGCAAGCGCGTCGAATTTTCCATGGCCACTGATAGATTCCAATATTGACATGACATTCTACCAAGCCGGAGACGAAGGTGAGGAAGATTGTGAAGTGCCAGGGAAACTCGCCAGGTTACTACAACAAGAAGAGTGGACCATATAG 900 0.41 MVTPVPDNGFRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESATNGGNAKRGLGSGSKFVLENTEPFSFEDVSESGSGSDGLLGALKAKLCDGKEGKFSFSFPSVSMVSKSTQNSSWKKESSLSSSSATYCLSQMNETHANPNSIPNSLSTSSKTFAKSLIIPNHDNEICQTQTPPMTNMLWSNEMENEYPWPIQMNHVLHDNSTTNLVASASASNFPWPLIDSNIDMTFYQAGDEGEEDCEVPGKLARLLQQEEWTI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10255 299 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Vifa1g10255 299 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vifa1g10255 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 192 - -
Vifa1g10255 299 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vifa1g10255 299 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Vifa1g10255 299 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vifa1g10255 299 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vifa1g10255 299 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vifa1g10255 299 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vifa1g10255 299 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g10255 299 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10255 Vifa-Chr1 1708584921 1708586032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10255 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.28e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g10255 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10255 - - psat:127080595 421.779