Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10250 ATGGAAAGATCATCACTCTCTTCATCTACTAAAAGGAGAGGTATAAAGAAAAGAGTAGTGGAAATTCCAATGAAGGATGTGGAAGGGACTAATACTCCACCGTCCGATTCATGGGCTTGGAGAAAGTACGGTCAGAAACCTATCAAAGGTTCCCCTTATCCGAGAGGTTATTATAGGTGTAGCAGTTCAAAGAATTGTCCGGCGAGAAAACAAGTGGAAAGGAACCATGTTGACCCCACGGTGCTTCTTGTAACATACACTTCCGATCACAACCACGCTGTGCCGCCACCTAGAAGCAACCGTAATACAACCAACGCCGCTGCATCGAACAAAGACTCTGAATCAGAACATGAAGGTGAACCTGAAACCGAGGAGAGATTTGCGGATCTTGGAGAGGTGTCGTTGGTCGCTACGGCGGATGAGTTAGGAGGATGGTTAGGGGAAGTGGAGGCGATCGCGTCGCCGGGGGTTTTGGAGTGTCCGGTTTTCTCGGAACAGGAGGTGTCGATGTTGGGGGAAGAGGAGATGTCGCTGTTTGCGGATCTTGGGGAGTTGCCGGAGTGTTCGGCGGTGTTTTGGAGAGGGAGGAGTAGCGCCGGCGATGTGAGTGTGGGGCCACTAGTGGAGGCAAATTGCTCATTGTGA 645 0.507 MERSSLSSSTKRRGIKKRVVEIPMKDVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKNCPARKQVERNHVDPTVLLVTYTSDHNHAVPPPRSNRNTTNAAASNKDSESEHEGEPETEERFADLGEVSLVATADELGGWLGEVEAIASPGVLECPVFSEQEVSMLGEEEMSLFADLGELPECSAVFWRGRSSAGDVSVGPLVEANCSL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10250 214 MobiDBLite consensus disorder prediction 89 110 - -
Vifa1g10250 214 Gene3D WRKY domain 22 96 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g10250 214 Pfam WRKY DNA -binding domain 36 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g10250 214 SUPERFAMILY WRKY DNA-binding domain 31 95 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g10250 214 ProSiteProfiles WRKY domain profile. 35 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g10250 214 MobiDBLite consensus disorder prediction 1 54 - -
Vifa1g10250 214 MobiDBLite consensus disorder prediction 89 125 - -
Vifa1g10250 214 MobiDBLite consensus disorder prediction 111 125 - -
Vifa1g10250 214 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 190 IPR044810 GO:0003700
Vifa1g10250 214 FunFam WRKY transcription factor 65 17 95 - -
Vifa1g10250 214 SMART WRKY_cls 34 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g10250 214 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10250 Vifa-Chr1 1707334206 1707335045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10250 4 209 WRKY Transcription Factor Family AT1G29280 48.230 1.64e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g10250 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10250 - - psat:127080568 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10250 1 1707334206 1707335045 Vifa1g10250 1 1707334206 1707335045 ECH