Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10248 ATGGCATCAGGGGCAATTTTCTCGTCGCTGCGGCGGCGAAGATCGCCGACGTTGGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGACGTCGCTTTGGTTCAGACTCTTGTTACGGTGGTGAACGAGCTTGTTTCATGTTTTTCGAAGTGTTCGTTTTTCTTTCAGAGGAAGAACACGCGTTCTCTGATTAGAAAAGTTGAGGTTTTTCAGTTGCTTTTGGAGTATTTGAATGATTCGGGTTCTAAGGGTTGTAATCTTCCAGCTACGGCTTTGCTTTGTTTGAAGGAGCTTTATTTGTTGTTGTATAGGTCAAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAGGAGGTATCGACTCTTTTGGATGTTTTCCCTGTAAGGGAGGTTTGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTGTTGAAGCAATCGAGGAGGGCTAAGTTGTTCATTGATATGGGAGATGATGCTCTTAGGATTCGATTCTTTGACTTTCTTGATGAGTTTGAGAATGGGAGGATTCCGGAATCGGATGAATTGCGGTGGTTTTATGTTGAGAAGTTGCGGATTGTTGATGCTGATTGTTGTAGAGGTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGGGATATTGAGCCTACGATTTCGGTGCTTAAAGGGTTGGTGGCTATGACGCGGTATTGTAGGTTTTTGATTTTTGGATTTGAGGAAGATGAGGTTGATTCGGAAAATGGAAATCAGAAGAAGCCAAAGATGGGTTTGATTACTCAAGAAATTGCTGATACGTTTTTAACTGTTCCGAAGGACTTTTGTTGTCCGATATCGTTGGATTTGATGAGAGACCCGGTGATCATTTCCACTGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCAAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCTCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGCAATGCTCATGGAGTTCCTCTTGATCCGCCAGAGGTGATGGATGCAATGGGTGAAGCTTTTGGATCTGCTTCTCCCACCAAAGCTGCCCTTGAAGCAAATAGAGCTACTGCCAATCTTCTCATTCAACAGCTAGCTAATGGATCGCAATCCGGAAAGACTATAGCTGCTCGGGAGATTCGATTGCTTGCAAAAACGGGCAAAGAAAATCGCGCCTTCCTTGCAGAAGCGGGGGCGATTCCTTATCTTCGGAACTTACTCTCGACACCTAATTCTGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACCTATCCATTTACGACAAGAACAAAAGCAGGATCATGGACGAGTCAGGTTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGGCATACAACAGAAGCAAGGGAAAATGCGGCTGCAACATTGTTCAGCCTATCAGCAGTCCATGACTATAAGAAGATAATTGCGGATGAAACTGGAGCTGTTGAAGCCCTAGCGGGGCTGTTGCAAAATGGGACTCCTAGAGGAAAGAAGGATGCAGTGACAGCTTTGTTCAATCTTTCCACACACACCGAAAATTGTGTTAGAATGATCGAGGCAGGAGCAGTAACAGCTCTAGTCGAAGCTTTGGGTTACGAAGGAGTTGCCGAGGAAGCCGCAGGTTCCCTTGCCTTGATTGTTCGGCAGCCTTTTGGAGCCAAAGCTGTAGTCAAACAGGAAGAAGCCGTAGCAGGATTGATAGGAATGATGCGTTGTGGAACGCCGAGAGGCAAGGAAAACGCAGTTGCAGCATTACTCGAGTTATGTCGGAGTGGAGGCTCAGCTGCAACAGAAATGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGAACAAAGCGAGCTAGACGAAAAGCCGCTTCACTTGCGAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGTTATGCATATGCTAGCAATTCAGCTCAAACTAGAGATATAAGCTTTGCTGCTGGTGATGTTTCAGTACCAATGTCAATCTCTGTACCTGTATTATAG 2160 0.4472 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVSCFSKCSFFFQRKNTRSLIRKVEVFQLLLEYLNDSGSKGCNLPATALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEVSTLLDVFPVREVCLSKDVREQVELLLKQSRRAKLFIDMGDDALRIRFFDFLDEFENGRIPESDELRWFYVEKLRIVDADCCRGEIEALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLIFGFEEDEVDSENGNQKKPKMGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVSNRALRNLIVQWCNAHGVPLDPPEVMDAMGEAFGSASPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGKENRAFLAEAGAIPYLRNLLSTPNSVAQENSVTALLNLSIYDKNKSRIMDESGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQNGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGYEGVAEEAAGSLALIVRQPFGAKAVVKQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATEMVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSAQTRDISFAAGDVSVPMSISVPVL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10248 719 FunFam RING-type E3 ubiquitin transferase 290 365 - -
Vifa1g10248 719 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Vifa1g10248 719 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Vifa1g10248 719 CDD RING-Ubox_PUB 292 344 IPR045210 -
Vifa1g10248 719 SUPERFAMILY RING/U-box 278 364 - -
Vifa1g10248 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Vifa1g10248 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Vifa1g10248 719 FunFam RING-type E3 ubiquitin transferase 367 688 - -
Vifa1g10248 719 Coils Coil 215 235 - -
Vifa1g10248 719 Gene3D - 394 670 IPR011989 -
Vifa1g10248 719 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Vifa1g10248 719 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Vifa1g10248 719 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Vifa1g10248 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Vifa1g10248 719 PANTHER U BOX DOMAIN-CONTAINING 58 675 - -
Vifa1g10248 719 SMART arm_5 550 588 IPR000225 GO:0005515
Vifa1g10248 719 SMART arm_5 589 630 IPR000225 GO:0005515
Vifa1g10248 719 SMART arm_5 509 549 IPR000225 GO:0005515
Vifa1g10248 719 SMART arm_5 424 464 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10248 Vifa-Chr1 1705349197 1705351356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10248 1 719 U-box Gene Family AT1G29340 68.614 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10248 - - gmx:100811153 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10248 1 1705349197 1705351356 Vifa1g10248 1 1705349197 1705351356 ECH
Vifa1g10248 1 1705349197 1705351356 Vifa1g10248 1 1705349197 1705351356 PCT