Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10247 ATGATGAAATGGGGTGGAAGTGGAACTGGAAGAAAACCTTCATCATCTTCTTCTTCTTCTTCTTCTGGTTCTTTTTCTTGGCTTTCAAAGTTAAAGCACATGAGAATCATCAATTCAGATTCAAATCATGCAAAAATGAAGCAGAAGGAAAAGCAGAAACCTACTACGTCGGTTAAGGATATTCCATTTCCACCTTCATGTTTTGATATTGGTGGAAGGAATGGTAAGAAAAGTGGAAGAAGATCACAATCACAAGGTGCAATCAAGTTAGAGCAGAAGGATTTTATTGGTTTAGAAGAAGAGAGAAAACTGTTGAATGATAACAAGAGTTTGATCCAGGTTGATGAGTATGATAGAGATAAAGAATATGAAAACATAAGGAGAAGATTCGAGAGAAAAGCGCAACAAGTTTTGGAAGAACAGCTTTTGAAGCTGGAAAGAGAAGCAAAGGAAGTTGAAGAACTTCAATATGAATCACCAAGAACAATTTGTACACCAAGAACAAGTACAACAACGCATTCTTTTGGTTCTTCTAATGCAGGTTTGAAGAAGATTTCTTGTAGCGTAAGAAACATCACAATGAATGCATCATCTGAGAAGAAACAGATTTCTGAGAAGGAGAATTTGAAGGAGAATGAAGAGATGAAGGTAAAGATGCAAGAAAAAGTAAGGAGGAAAGTAAAGAAAGTTTCGAGGGTGAAAATATATTCACCAAGGATGATATCAAAAGTTGAACTATGCAGAATAAAAGCATTAGAAGAAATGAGGAACAAAGCAAAGCAAAAGATGAAGAGGGAAAAGAAGGAAGAGATTATGGAGGAAATTAGTATTAATATTAAACCAGAATTAGATAGTTTTGCTGTGATTAAGTGTTCATTGAATCCAAAGCAAGATTTTAGAGATTCAATGATTGAGATGATTGAAGAGAAAAGGATTAGTAAGGCAGAAGAAATGGAAGAGTTGTTGGCATGTTATTTGACTTTGAATGCTGATGAGTATCATGATCTGATAATCAAAGTGTTTAGGCAGGTATGGTTTGATATGAGTCAATATGGTTTTGGTATTAATTAA 1071 0.3445 MMKWGGSGTGRKPSSSSSSSSSGSFSWLSKLKHMRIINSDSNHAKMKQKEKQKPTTSVKDIPFPPSCFDIGGRNGKKSGRRSQSQGAIKLEQKDFIGLEEERKLLNDNKSLIQVDEYDRDKEYENIRRRFERKAQQVLEEQLLKLEREAKEVEELQYESPRTICTPRTSTTTHSFGSSNAGLKKISCSVRNITMNASSEKKQISEKENLKENEEMKVKMQEKVRRKVKKVSRVKIYSPRMISKVELCRIKALEEMRNKAKQKMKREKKEEIMEEISINIKPELDSFAVIKCSLNPKQDFRDSMIEMIEEKRISKAEEMEELLACYLTLNADEYHDLIIKVFRQVWFDMSQYGFGIN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10247 356 Coils Coil 249 272 - -
Vifa1g10247 356 MobiDBLite consensus disorder prediction 9 28 - -
Vifa1g10247 356 Coils Coil 196 216 - -
Vifa1g10247 356 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 129 349 IPR038933 GO:0045892
Vifa1g10247 356 Pfam Transcriptional repressor, ovate 292 348 IPR006458 -
Vifa1g10247 356 NCBIfam uncharacterized plant-specific domain TIGR01568 287 348 IPR006458 -
Vifa1g10247 356 Coils Coil 128 158 - -
Vifa1g10247 356 ProSiteProfiles OVATE domain profile. 288 347 IPR006458 -
Vifa1g10247 356 MobiDBLite consensus disorder prediction 1 88 - -
Vifa1g10247 356 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10247 Vifa-Chr1 1705263748 1705264818 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa1g10247 Ovate 6.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10247 - - cam:101515364 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10247 1 1705263748 1705264818 Vifa1g10247 1 1705263748 1705264818 ECH