Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10245 ATGGAGGAAATTCAGAGAAGTTTAAATTCCATGGCTCCTTTTCTATCTAAGACTTATATGATGGTTAATGATCCATCCACTGATGCCATTATTTCATGGAGTTCTACTAATAGGAGTTTCGTTGTTTGGAACCAACCCGAGTTTTCAAAGGATTTGTTGCCCAAATTCTTTAAGCATAATAACTTCTCGAGTTTCGTCAGACAGCTTAACACCTATGGCTTTAGAAAGGTTGGTCAAGAGCAATGGGAATTTTCAAATGATTATTTTGTAAGAGACCAGCCTCAACTTATGCAGAATATCCACAGGCGCAAAGCAATTTTTAGCCATTCTGCGGATAATGCTAATAGGCAAGGAGAGGGGGCTGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTCCATTAACAGAATCAGAACGGCAGAATTATAAAGCTCAGATAGAAAAACTGAGACAGGAAAAAGAACAACTAGTTATGGAACGTCAGAGGCACGAAGTGGAGTGGAAAACGAATGAGATTCAGTTGCATTACTCGAAGGATCGTTTGCAACATTTGGAATTGAATCAACAAAGTCTGCTCGCTTCCGTTGGTCAAGTGCTGCAGAGATCCGCGGAAGAGGCAAGTCTCCTGCCAGAGTCAGTAGACGCGGGGAGAAAACGAAGGTATCGGGCAAATGCTCCCTTTGGTGATTTGCCCAGCATTGAAATTCCGAAGGAAAATGCTGAGAGTATGACTGATCTCTCTATAGACATGGAACGATTGGATCTGCTCGAATCCTCCTTGACGTTTTGGGAGAATTTCGTAAAGGAACTTAACAACACATCTTATGAAACTCCTTCGAACTTAGACTTTGATGATTCTATGAATCATTCTCATAGTTCCGGAATGTCTGGTGTGCAAATTGATGTTGAAGTTCAGCCCGAGTCATCAGGAAACCAAATGAACTCTGTGTCGGATGTATTCGTTAGTCCTGATCCTGATCCTGATCCTGTCGAGCTTGAGCCGGGCCATATCTTTGTTGATGATCCTGTTGCACCCGAGGCAGCTGTTATCGCGGTTCCTGATCCCGTTCCATCTGAGCCAGCTGTTACCGCTGTTCCTCATTCCGTTGCACCTGAGCTACCTGTTATCGCGGTTCCTGATTCTGTTGCACCTGAGCCAGCTGTTGCCGTTGTTCCTGACTCTGTTGCACTGAAAGAACAACAGGTTGCAACAATCCCAGGTACTAATGCATTTAATATACCATTTTGGCAAAAGTATTTGGTGGAAACTCCTGTTGATGATGAATCAGAAATTCGTTCTGAACTTAGCAAATATTGCTGGACGCGGAGACATCTTAAGCCTCCTCAAATTGATAAAGCAGGGAAAGCTTAG 1368 0.4386 MEEIQRSLNSMAPFLSKTYMMVNDPSTDAIISWSSTNRSFVVWNQPEFSKDLLPKFFKHNNFSSFVRQLNTYGFRKVGQEQWEFSNDYFVRDQPQLMQNIHRRKAIFSHSADNANRQGEGAAGAGAGAGAGPLTESERQNYKAQIEKLRQEKEQLVMERQRHEVEWKTNEIQLHYSKDRLQHLELNQQSLLASVGQVLQRSAEEASLLPESVDAGRKRRYRANAPFGDLPSIEIPKENAESMTDLSIDMERLDLLESSLTFWENFVKELNNTSYETPSNLDFDDSMNHSHSSGMSGVQIDVEVQPESSGNQMNSVSDVFVSPDPDPDPVELEPGHIFVDDPVAPEAAVIAVPDPVPSEPAVTAVPHSVAPELPVIAVPDSVAPEPAVAVVPDSVALKEQQVATIPGTNAFNIPFWQKYLVETPVDDESEIRSELSKYCWTRRHLKPPQIDKAGKA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10245 455 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 275 IPR027725 -
Vifa1g10245 455 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Vifa1g10245 455 Coils Coil 138 165 - -
Vifa1g10245 455 Gene3D - 6 104 IPR036388 -
Vifa1g10245 455 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g10245 455 FunFam Heat shock transcription factor 1 7 104 - -
Vifa1g10245 455 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10245 Vifa-Chr1 1705069771 1705071258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10245 7 302 HSF AT4G18880 43.607 2.50e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g10245 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10245 K09419 - gmx:100798004 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10245 1 1705069771 1705071258 Vifa1g10245 1 1705069771 1705071258 ECH
Vifa1g07874 1 1228834156 1228835480 Vifa1g10245 1 1705069771 1705071258 ECH
Vifa1g10245 1 1705069771 1705071258 Vifa1g07874 1 1228834156 1228835480 PCT