LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g10238	ATGGTCTTGGTTTATTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCCGTCACCATTGCTCACGCCTCAACCAAAAGATTTCCACTCAAAGAGGTACCAGCTTATTTAATAGCACAAGTTCTTGGATCCACACTTGCGAGTGGAACACTTAGACTTATATTCAATGGCGATAAAAATCATTTCTCCGGAACACTTCCGGCTGCTTCTGATCTTCAAGCGTTTGTGATTGAATTCATAATTACTTTTTATCTTATGTTCATCATCTCTGGAGTTGCTACCGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACCGTACTTCTAAATGTCATGTTTGCCGGGCCAATTACGGGAGCATCAATGAACCCTGCAAGAAGCTTAGGGCCTGCTATTGTTCATAAGGAGTACAGAGGAATATGGATATATTTAATCGCAACGACTCTTGGTGCTGTGGCCGGTACATGGGCGTATACTTTCATTCGGTACACGAACAAGCCGGTGCGCGAAATTAGTAAGAGTGCATCTTTTCTTAAAGGACTACAAAATGGTGAAGCAAAGTGA	579	0.4249	MVLVYSLGHISGAHFNPAVTIAHASTKRFPLKEVPAYLIAQVLGSTLASGTLRLIFNGDKNHFSGTLPAASDLQAFVIEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHKEYRGIWIYLIATTLGAVAGTWAYTFIRYTNKPVREISKSASFLKGLQNGEAK	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g10238	192	PRINTS	Major intrinsic protein family signature	109	131	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g10238	192	PRINTS	Major intrinsic protein family signature	146	166	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g10238	192	PRINTS	Major intrinsic protein family signature	78	96	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g10238	192	PRINTS	Major intrinsic protein family signature	33	52	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g10238	192	SUPERFAMILY	Aquaporin-like	1	176	IPR023271	-
	Vifa1g10238	192	Gene3D	Glycerol uptake facilitator protein.	1	179	IPR023271	-
	Vifa1g10238	192	Pfam	Major intrinsic protein	2	163	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa1g10238	192	ProSitePatterns	MIP family signature.	14	22	IPR022357	-
	Vifa1g10238	192	PANTHER	AQUAPORIN NIP2-1	1	183	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g10238	Vifa-Chr1	1703751281	1703752172	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g10238	1	190	Major Intrinsic Protein MIP	AT5G37820	60.000	7.66e-78	233

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g10238	K09874		-	gmx:100812577	335.88