Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10237 ATGGTGGATGATAATCCAGACAGCATTGAAGCTCATGAGGTAGTTTTAGATGTAGATGGTGATGCCTCAAATATCTCTAAGGAGACGGATATAAAAGACTCTGTGCCCCTTTTGAAGAAGTTGGTAGCAGAAGTCGTAGGAACATACATAATGATATTTACGGGTTGCGCCGCAGTCATTGTAAACCTAAACAATGATCATGTAGTAACACTTCCTGGAATCGCTTTCGCTTGGGGATTTACCGTTATGGTATTGGTTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACCATAGCTCATGCTTCAACTAAAATATTTCCCTTCAAACAGGTGCCAGCTTACATTATAGCTCAAGTCCTTGGATCAACACTAGCTAGTGGGACTCTAAGACTTATATTTAATGGCAAAGAAGATCATTTTATTGGAACACTCGCAACTGGTTCTGACCTGCAAGCTTTCGTAATCGAGTTTATATGCACCTTCTTCCTTATGTTCGTTATTTCTGGAGTAGCCACCGATAACAGAGCAGTAGGTGAATTAGCCGGACTTGCAGTTGGGTCTACAATAATAATAGATATATTGTTTGCAGGACCACTCACGGGAGCATCAATGAATCCAGCTAGAAGCTTAGGACCTGCAATTGTGTACCATGAATATACAGGACTGTGGATATATTTGATTTCACCCATTCTAGGAGCTTTGATAGGTACATGGACTTACAATTTCATCAGGCACACCAACAGGCCAATGTGTGATGAGCACACCAAGATTGAACTCACAAAGATTGTCCCTTTTCTCAGACGGAGCATATCATAA 831 0.4103 MVDDNPDSIEAHEVVLDVDGDASNISKETDIKDSVPLLKKLVAEVVGTYIMIFTGCAAVIVNLNNDHVVTLPGIAFAWGFTVMVLVYSLGHISGAHFNPAVTIAHASTKIFPFKQVPAYIIAQVLGSTLASGTLRLIFNGKEDHFIGTLATGSDLQAFVIEFICTFFLMFVISGVATDNRAVGELAGLAVGSTIIIDILFAGPLTGASMNPARSLGPAIVYHEYTGLWIYLISPILGALIGTWTYNFIRHTNRPMCDEHTKIELTKIVPFLRRSIS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10237 276 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Vifa1g10237 276 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vifa1g10237 276 SUPERFAMILY Aquaporin-like 35 256 IPR023271 -
Vifa1g10237 276 PANTHER AQUAPORIN NIP2-1 31 253 IPR034294 -
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g10237 276 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10237 Vifa-Chr1 1703730754 1703732185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10237 7 272 Major Intrinsic Protein MIP AT5G37820 52.399 7.83e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10237 K09874 - gmx:100812577 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10237 1 1703730754 1703732185 Vifa1g10237 1 1703730754 1703732185 ECH
Vifa1g10237 1 1703730754 1703732185 Vifa1g10237 1 1703730754 1703732185 PCT