Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10233 ATGGCAGCAACCAAAAGAAAAGCCATAGGCATTGATCTTGGCACAACCTATAGTTGCGTGGCAGTATGGCGAAACAATCGTGTTGAGATCATTCCAAACGACCAAGGATACCGCATCACCCCGTCTTATGTCGCCTTCACTGAAACCGAAAGGTTAATAGGCGATGCTGCCATAAACCAGTTAGCCACTAATCCACACAACACTGTTTTCAATGCCAAACGTTTGATAGGTCGTCGATTCTCCGACCCATCAGTTCAACAAGACATAAAGCTTTGTCCTTTTAAGGTTGTCCCAAACAACAAAGACAAACCAATGATTGTGCTGACTTACAAAGGCGAAGAGAAACGTATTTCACCTCAAGAGATATCTTCGATGGTGTTGTCAAAGTTGAAGGATGATGCTGAAGCTTATTTGGGATATGAAGTGAAAGATGCTGTTATCACCGTTCCTGCTCACTTCAACAACTCACAGAGACAGGCTACAAAAGATGCAGGGAAAATCGCCGGTTTTAACGTGATGCGGATCATCAATGAGCCTACTGCAGCTGCTATTGCTTATGGTTTTGACAAGATAAAATGGAGAGAAGGTGAGAAGAATGTGCTTGTGTTTGATCTTGGTGGTGGAACTTTTGATGTTTCCTTGGTGACCAATGATGAAGGAATGTTCAAGGTTAAGGCTACACTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTTGAACTGTTTCATAGAAAGTATAAGAAGGATTTGAACATCACTGAAAATTCCAAAGCTTTGGGGAGGTTAAGGTCAGCATGTGAGAAAGCAAAAAGATTACTTTCTTCAACTTCAGTTACAACCATTGAGCTTGATTCTCTATGTGAAGGGATTGATCTACATGTAACTGTTACTAGAGCTTTGTTTGAGGAAATAAACAAAGATTTGTTCAGAAAGTGCATGGAGACTGTGGAAAAGTGTTTGAGTGAGGCAAAGATTAATAAAAACCGAGTTCATGATTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAACTATTGAAGGAAATGTTTAGAGTCAACGGCGAAATCAAAGAGCCTTGCAAAAGCATTAATCCTGATGAAGCTGTGGCTTATGGTGCAGCAGTTCAAGCAGCAATATTGAATGATGAAGGAGACAAGAAAATCAAAGACTTGTTGTTGTTGGATGTGATGCCTTTTAGTCTTGGTGTTGAGACAAATGATGGTGTCATGTCTGTTTTGATTCCAAAGAATACAATGATCCCTACAAAAAAGGAGAGTGTTTTTTCTACACTCTCTCATAATCAAGATGGTGTTTTGGTCAAAGTGTATGAAGGAGAAGGAGTTAAGACTGAGGATAACTTTTTGCTTGGGAAATTGGAGCTACAAGAATTCTCTTCAACACCTAGGAAGGTTCCAAATATCAATATTTGTTTTGATGTTGATGTGAATGGTATTTTAGAGGTTACTGCTGAAGATAAGACACAAGGGTTGAAAAAGAAGATTACTATCATCAACAAGGAGGGAAGGTTGAGTTGTGAAGAGATGAGGAGGATGGTGAGGGATGGAGAGAAGTATAAGGTAGAAGATGAGGAGGCGAGGAAGAAGGTGAAGGCAAAGAACTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAAAGTGAAGATGCTTGAGAAGGCTGTGGAGGAAATTATAGATTGGTTTGATAGAAATCAATTGGCTGAAATTGATGAGTTTGAGTTCAAGAAACAGGAGTTGGAAAATAATATCAAGGTTCTTCAATTTAAAAAGATTTAA 1827 0.3914 MAATKRKAIGIDLGTTYSCVAVWRNNRVEIIPNDQGYRITPSYVAFTETERLIGDAAINQLATNPHNTVFNAKRLIGRRFSDPSVQQDIKLCPFKVVPNNKDKPMIVLTYKGEEKRISPQEISSMVLSKLKDDAEAYLGYEVKDAVITVPAHFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGFDKIKWREGEKNVLVFDLGGGTFDVSLVTNDEGMFKVKATLGDTHLGGVDFDNNLVNRLVELFHRKYKKDLNITENSKALGRLRSACEKAKRLLSSTSVTTIELDSLCEGIDLHVTVTRALFEEINKDLFRKCMETVEKCLSEAKINKNRVHDFVLVGGSTRIPKIQQLLKEMFRVNGEIKEPCKSINPDEAVAYGAAVQAAILNDEGDKKIKDLLLLDVMPFSLGVETNDGVMSVLIPKNTMIPTKKESVFSTLSHNQDGVLVKVYEGEGVKTEDNFLLGKLELQEFSSTPRKVPNINICFDVDVNGILEVTAEDKTQGLKKKITIINKEGRLSCEEMRRMVRDGEKYKVEDEEARKKVKAKNLFENYVYEMREKVKMLEKAVEEIIDWFDRNQLAEIDEFEFKKQELENNIKVLQFKKI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10233 608 Gene3D Actin; Chain A, domain 4 234 319 - -
Vifa1g10233 608 SUPERFAMILY Actin-like ATPase domain 197 391 IPR043129 -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 482 498 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 7 20 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 145 165 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 208 218 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 35 47 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 57 65 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 374 394 - -
Vifa1g10233 608 PRINTS 70kDa heat shock protein signature 401 420 - -
Vifa1g10233 608 Gene3D - 70 125 - -
Vifa1g10233 608 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 606 IPR029048 -
Vifa1g10233 608 Gene3D - 9 389 - -
Vifa1g10233 608 FunFam Heat shock protein 70 9 197 - -
Vifa1g10233 608 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vifa1g10233 608 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vifa1g10233 608 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 554 IPR029047 -
Vifa1g10233 608 SUPERFAMILY Actin-like ATPase domain 7 189 IPR043129 -
Vifa1g10233 608 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 390 573 IPR029047 -
Vifa1g10233 608 FunFam Heat shock 70 kDa protein 395 550 - -
Vifa1g10233 608 Pfam Hsp70 protein 8 599 IPR013126 GO:0005524|GO:0140662
Vifa1g10233 608 Coils Coil 586 606 - -
Vifa1g10233 608 Gene3D - 191 371 - -
Vifa1g10233 608 FunFam Heat shock protein ssb1 70 125 - -
Vifa1g10233 608 FunFam Heat shock 70 kDa 234 319 - -
Vifa1g10233 608 PANTHER HEAT SHOCK PROTEIN 70KDA 8 576 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10233 Vifa-Chr1 1703506469 1703508295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10233 1 597 Calmodulin-binding Proteins AT1G16030 66.939 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10233 K03283 - gmx:100788531 884.789