Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10221 ATGGAATCGAAAAACCCTACTAGGTTCAAGCTTGGGAAACAGTCGTCGTTGGCACCGGAGCGGGATAGGGAAGAGGATGAAGTTCAGCATGAGGTTGATGGGGCTATTGATTCTGGAGTTAGGTTGATGTATTCGGCGAATGAAGGTGATGTTGATGGGATTCGTGAGGTGTTGGAATCTGGTGTGAGTGTTAATTTTAGGGATGCTGATGGACGTACTGCTCTTCATATTGCTGCTTGTCAGGGGTTGACGCATGTTGTTGATTTGTTGCTTGTGAATGGGGCTGATGTTGATCCTAAAGATCGATGGGGGAGCACGCCCCTTGCAGATGCTATATTCTATAAAAACAATGACGTGATCAAACTATTGGAGAATCATGGAGCAAAGCCTCTGATGACCTCTATGCATGTTAATCATGCACGTGAAGTCCCGGAATATGAAATCGATCCTAAAGAACTTGATTTTACCAACAGTAAGGAAATAACAAAGGGAACTTTCTGTATTGCGTTGTGGCGTGGGACTGAGGTTGCAGTAAAAAAGCTTGGGGAGGACGTCATAATCAATGAGGAGAAAGTGAAGGCGTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGGCATCCAAATGTAGTACAATTTCTTGGTGCTGTGACTCAGAGTAGTCCATTGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTAAAACCAAGTACAGCTGTTAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTACTAGCAGTTAAAGAAGACAAACCTCTAACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTCCCCTCCTTTTTCTGCTAAGCGTGATGACGAGGTTCCTAAGGTTTATGCTTCAAAAGAGAGACCGCCCTTCCGAGCTCCTACTAAGCATTATTCTCATGGAATTCGAGAGTTGATTGAAGAGTGTTGGAATGAGAGTCCAGCAAAGAGGCCAACATTCAGACAAATAATAACAAAACTGGAAACCATCTACAATACAATTGGTCAAAAAGGACGTTGGAAGGTTAAAACATTGAGGTGCTTTCCGAATCTGGAAGCTTTGTTGAAGAGAGATCGTTCAAAATTAAGCAGTCGGGGCAGTTCATCTCGCTCCTCTACCAGCCGTATATGA 1374 0.4294 MESKNPTRFKLGKQSSLAPERDREEDEVQHEVDGAIDSGVRLMYSANEGDVDGIREVLESGVSVNFRDADGRTALHIAACQGLTHVVDLLLVNGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPLMTSMHVNHAREVPEYEIDPKELDFTNSKEITKGTFCIALWRGTEVAVKKLGEDVIINEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPLMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEMIEGSPPFSAKRDDEVPKVYASKERPPFRAPTKHYSHGIRELIEECWNESPAKRPTFRQIITKLETIYNTIGQKGRWKVKTLRCFPNLEALLKRDRSKLSSRGSSSRSSTSRI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10221 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vifa1g10221 457 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Vifa1g10221 457 Pfam Ankyrin repeats (3 copies) 42 132 IPR002110 GO:0005515
Vifa1g10221 457 SMART ANK_2a 37 66 IPR002110 GO:0005515
Vifa1g10221 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vifa1g10221 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vifa1g10221 457 MobiDBLite consensus disorder prediction 15 31 - -
Vifa1g10221 457 CDD STKc_MAP3K-like 161 408 - -
Vifa1g10221 457 SUPERFAMILY Ankyrin repeat 41 133 IPR036770 -
Vifa1g10221 457 FunFam Integrin-linked protein kinase family 17 146 - -
Vifa1g10221 457 Gene3D - 5 145 IPR036770 -
Vifa1g10221 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 139 417 - -
Vifa1g10221 457 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
Vifa1g10221 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Vifa1g10221 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Vifa1g10221 457 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g10221 457 Gene3D Phosphorylase Kinase; domain 1 147 230 - -
Vifa1g10221 457 Gene3D Transferase(Phosphotransferase) domain 1 231 446 - -
Vifa1g10221 457 ProSiteProfiles Protein kinase domain profile. 120 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g10221 457 SUPERFAMILY Protein kinase-like (PK-like) 145 409 IPR011009 -
Vifa1g10221 457 FunFam Os01g0748600 protein 141 428 - -
Vifa1g10221 457 Pfam Protein tyrosine and serine/threonine kinase 173 408 IPR001245 GO:0004672|GO:0006468
Vifa1g10221 457 PIRSF ILK 1 430 - -
Vifa1g10221 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10221 Vifa-Chr1 1701663031 1701668220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10221 8 429 MAP Kinase Kinase Kinase AT4G18950 67.840 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa1g10221 PK_Tyr_Ser-Thr 2.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10221 - - gmx:100790126 773.081